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  5. AT2G21930

AT2G21930


Description : F-box associated ubiquitination effector family protein


Gene families : OG_01_0000008 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G21930
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT1G31080 No alias F-box family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31090 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31163 No alias F-box associated ubiquitination effector family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G31620 No alias unknown protein; Has 9 Blast hits to 9 proteins in 2... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G47790 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G52495 No alias No description available 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G02890 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G19630 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G04660 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G10240 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G23960 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49440 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49450 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G19930 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G29970 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G18160 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44345 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62060 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0001944 vasculature development IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008526 phosphatidylinositol transfer activity IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034599 cellular response to oxidative stress IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
CC GO:0042645 mitochondrial nucleoid IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051131 chaperone-mediated protein complex assembly IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0070407 oxidation-dependent protein catabolic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
MF GO:0120014 phospholipid transfer activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR013187 F-box-assoc_dom_typ3 166 286
PLAZA 3.0 Dicots AT2G21930