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  5. AT2G22620

AT2G22620


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_01_0011928 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G22620
Cluster HCCA: Cluster_78


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0001944 vasculature development IEP HCCA
MF GO:0004034 aldose 1-epimerase activity IEP HCCA
MF GO:0004126 cytidine deaminase activity IEP HCCA
MF GO:0004567 beta-mannosidase activity IEP HCCA
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP HCCA
BP GO:0006213 pyrimidine nucleoside metabolic process IEP HCCA
BP GO:0006216 cytidine catabolic process IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP HCCA
BP GO:0009806 lignan metabolic process IEP HCCA
BP GO:0009807 lignan biosynthetic process IEP HCCA
BP GO:0009812 flavonoid metabolic process IEP HCCA
BP GO:0009813 flavonoid biosynthetic process IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009972 cytidine deamination IEP HCCA
BP GO:0010023 proanthocyanidin biosynthetic process IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
BP GO:0010191 mucilage metabolic process IEP HCCA
BP GO:0010192 mucilage biosynthetic process IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0010253 UDP-rhamnose biosynthetic process IEP HCCA
MF GO:0010280 UDP-L-rhamnose synthase activity IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP HCCA
MF GO:0010489 UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity IEP HCCA
MF GO:0010490 UDP-4-keto-rhamnose-4-keto-reductase activity IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016207 4-coumarate-CoA ligase activity IEP HCCA
MF GO:0016595 glutamate binding IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016618 hydroxypyruvate reductase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016985 mannan endo-1,4-beta-mannosidase activity IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
MF GO:0030267 glyoxylate reductase (NADP+) activity IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
CC GO:0031312 extrinsic component of organelle membrane IEP HCCA
BP GO:0033478 UDP-rhamnose metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
CC GO:0042406 extrinsic component of endoplasmic reticulum membrane IEP HCCA
MF GO:0042409 caffeoyl-CoA O-methyltransferase activity IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
MF GO:0045552 dihydrokaempferol 4-reductase activity IEP HCCA
BP GO:0046087 cytidine metabolic process IEP HCCA
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP HCCA
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP HCCA
BP GO:0046135 pyrimidine nucleoside catabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046283 anthocyanin-containing compound metabolic process IEP HCCA
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP HCCA
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP HCCA
MF GO:0050113 inositol oxygenase activity IEP HCCA
MF GO:0050377 UDP-glucose 4,6-dehydratase activity IEP HCCA
MF GO:0050589 leucocyanidin oxygenase activity IEP HCCA
BP GO:0051552 flavone metabolic process IEP HCCA
BP GO:0051553 flavone biosynthetic process IEP HCCA
BP GO:0051554 flavonol metabolic process IEP HCCA
BP GO:0051555 flavonol biosynthetic process IEP HCCA
CC GO:0071944 cell periphery IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072529 pyrimidine-containing compound catabolic process IEP HCCA
MF GO:0106345 glyoxylate reductase activity IEP HCCA
BP GO:0120178 steroid hormone biosynthetic process IEP HCCA
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
BP GO:2000029 regulation of proanthocyanidin biosynthetic process IEP HCCA
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 398 469
IPR010325 Rhamnogal_lyase 34 243
IPR029411 RG-lyase_III 483 671
PLAZA 3.0 Dicots AT2G22620