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  5. Pp3c3_2620V3.1

Pp3c3_2620V3.1


Description : photosystem II subunit QA


Gene families : OG_01_0000874 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000874_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_2620V3.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT1G14150 No alias PsbQ-like 2 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G01440 No alias PsbQ-like 1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G05180 No alias photosystem II subunit Q-2 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G21280 No alias photosystem II subunit QA 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre08.g372450 No alias Oxygen-evolving enhancer protein 3, chloroplastic... 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g07510.1 No alias component PsbQ of PS-II oxygen-evolving center 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09519.1 No alias component PsbQ of PS-II oxygen-evolving center 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!