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  5. Pp3c4_19000V3.1

Pp3c4_19000V3.1


Description : ubiquitin 6


Gene families : OG_01_0001139 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_19000V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G23410 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G47110 No alias ubiquitin 6 0.51 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62250 No alias ubiquitin 5 0.52 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g12760.1 No alias component RPS27a of SSU proteome 0.32 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01381.1 No alias component eS31 of SSU proteome 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR002906 Ribosomal_S27a 102 147
No external refs found!