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  5. Pp3c4_1940V3.1

Pp3c4_1940V3.1


Description : Eukaryotic rpb5 RNA polymerase subunit family protein


Gene families : OG_01_0001812 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001812_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_1940V3.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Pp3c16_12587V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_283V3.1 No alias RNA polymerase II fifth largest subunit, C 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_21420V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0006820 anion transport IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 109 177
No external refs found!