1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c4_28370V3.1

Pp3c4_28370V3.1


Description : light harvesting complex of photosystem II 5


Gene families : OG_01_0002709 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002709_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_28370V3.1
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT4G10340 No alias light harvesting complex of photosystem II 5 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_28410V3.1 No alias light harvesting complex of photosystem II 5 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_00732.1 No alias component LHCb5 of LHC-II complex 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!