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Description : BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 27 Blast hits to 27 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene families : OG_01_0003038 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003038_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT2G25565 | |
| Cluster | HCCA: Cluster_37 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005575 | cellular_component | ND | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0003979 | UDP-glucose 6-dehydrogenase activity | IEP | HCCA |
| MF | GO:0004557 | alpha-galactosidase activity | IEP | HCCA |
| MF | GO:0004725 | protein tyrosine phosphatase activity | IEP | HCCA |
| CC | GO:0005618 | cell wall | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| CC | GO:0005740 | mitochondrial envelope | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0005976 | polysaccharide metabolic process | IEP | HCCA |
| BP | GO:0006065 | UDP-glucuronate biosynthetic process | IEP | HCCA |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | HCCA |
| BP | GO:0006672 | ceramide metabolic process | IEP | HCCA |
| BP | GO:0006677 | glycosylceramide metabolic process | IEP | HCCA |
| BP | GO:0006687 | glycosphingolipid metabolic process | IEP | HCCA |
| MF | GO:0008131 | primary amine oxidase activity | IEP | HCCA |
| BP | GO:0008219 | cell death | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| BP | GO:0009741 | response to brassinosteroid | IEP | HCCA |
| BP | GO:0009806 | lignan metabolic process | IEP | HCCA |
| BP | GO:0009807 | lignan biosynthetic process | IEP | HCCA |
| BP | GO:0009888 | tissue development | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| MF | GO:0009916 | alternative oxidase activity | IEP | HCCA |
| BP | GO:0010014 | meristem initiation | IEP | HCCA |
| BP | GO:0010087 | phloem or xylem histogenesis | IEP | HCCA |
| BP | GO:0010089 | xylem development | IEP | HCCA |
| BP | GO:0010230 | alternative respiration | IEP | HCCA |
| BP | GO:0010371 | regulation of gibberellin biosynthetic process | IEP | HCCA |
| BP | GO:0010383 | cell wall polysaccharide metabolic process | IEP | HCCA |
| BP | GO:0010393 | galacturonan metabolic process | IEP | HCCA |
| BP | GO:0010410 | hemicellulose metabolic process | IEP | HCCA |
| BP | GO:0010413 | glucuronoxylan metabolic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0010623 | programmed cell death involved in cell development | IEP | HCCA |
| BP | GO:0012501 | programmed cell death | IEP | HCCA |
| BP | GO:0014070 | response to organic cyclic compound | IEP | HCCA |
| BP | GO:0016051 | carbohydrate biosynthetic process | IEP | HCCA |
| BP | GO:0016137 | glycoside metabolic process | IEP | HCCA |
| BP | GO:0016139 | glycoside catabolic process | IEP | HCCA |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0017040 | N-acylsphingosine amidohydrolase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019377 | glycolipid catabolic process | IEP | HCCA |
| BP | GO:0019747 | regulation of isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0030149 | sphingolipid catabolic process | IEP | HCCA |
| CC | GO:0030312 | external encapsulating structure | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032881 | regulation of polysaccharide metabolic process | IEP | HCCA |
| BP | GO:0032885 | regulation of polysaccharide biosynthetic process | IEP | HCCA |
| MF | GO:0033549 | MAP kinase phosphatase activity | IEP | HCCA |
| MF | GO:0033550 | MAP kinase tyrosine phosphatase activity | IEP | HCCA |
| BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042546 | cell wall biogenesis | IEP | HCCA |
| BP | GO:0043405 | regulation of MAP kinase activity | IEP | HCCA |
| BP | GO:0043407 | negative regulation of MAP kinase activity | IEP | HCCA |
| BP | GO:0043408 | regulation of MAPK cascade | IEP | HCCA |
| BP | GO:0043409 | negative regulation of MAPK cascade | IEP | HCCA |
| BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | HCCA |
| CC | GO:0045298 | tubulin complex | IEP | HCCA |
| BP | GO:0045488 | pectin metabolic process | IEP | HCCA |
| BP | GO:0045491 | xylan metabolic process | IEP | HCCA |
| BP | GO:0045492 | xylan biosynthetic process | IEP | HCCA |
| BP | GO:0046398 | UDP-glucuronate metabolic process | IEP | HCCA |
| BP | GO:0046466 | membrane lipid catabolic process | IEP | HCCA |
| BP | GO:0046477 | glycosylceramide catabolic process | IEP | HCCA |
| BP | GO:0046479 | glycosphingolipid catabolic process | IEP | HCCA |
| BP | GO:0046514 | ceramide catabolic process | IEP | HCCA |
| BP | GO:0048658 | anther wall tapetum development | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0055046 | microgametogenesis | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:0080147 | root hair cell development | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1900030 | regulation of pectin biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:2000652 | regulation of secondary cell wall biogenesis | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT2G25565 |