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  5. Pp3c5_1420V3.1

Pp3c5_1420V3.1


Description : nuclear RNA polymerase C2


Gene families : OG_01_0000388 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000388_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_1420V3.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11530V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15720V3.1 No alias DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19410V3.1 No alias DNA-directed RNA polymerase family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10710V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_6070V3.1 No alias DNA-directed RNA polymerase family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_12270V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_3310V3.1 No alias No annotation 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_8540V3.1 No alias nuclear RNA polymerase C2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_15140V3.1 No alias DNA-directed RNA polymerase family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_35890V3.1 No alias DNA-directed RNA polymerase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_37780V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_14800V3.1 No alias DNA-directed RNA polymerase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24950V3.1 No alias nuclear RNA polymerase C2 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_18580V3.1 No alias nuclear RNA polymerase A2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12670V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17790V3.1 No alias DNA-directed RNA polymerase family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_170V3.1 No alias DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 104 165
No external refs found!