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  5. Pp3c5_1800V3.1

Pp3c5_1800V3.1


Description : histone H2A 10


Gene families : OG_01_0000053 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000053_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_1800V3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 No alias Histone superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G51060 No alias histone H2A 10 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G54690 No alias gamma histone variant H2AX 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G20670 No alias histone H2A 13 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G27230 No alias histone H2A 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27670 No alias histone H2A 7 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59870 No alias histone H2A 6 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g02370.1 No alias histone (H2A) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03481.1 No alias histone (H2A) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 126
IPR007125 Histone_H2A/H2B/H3 12 90
No external refs found!