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  5. Pp3c5_23010V3.1

Pp3c5_23010V3.1


Description : CLPC homologue 1


Gene families : OG_01_0006095 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006095_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_23010V3.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
AT3G48870 No alias Clp ATPase 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G50920 No alias CLPC homologue 1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g02560.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15622.1 No alias chaperone component ClpC of chloroplast Clp-type protease complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 116 168
IPR004176 Clp_R_dom 192 243
IPR003959 ATPase_AAA_core 644 819
IPR003959 ATPase_AAA_core 307 436
IPR041546 ClpA/ClpB_AAA_lid 445 547
IPR019489 Clp_ATPase_C 825 903
No external refs found!