Pp3c6_21770V3.1

Description : Ribosomal protein S13/S18 family

Gene families : OG_01_0000828 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000828_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c6_21770V3.1
Cluster	HCCA: Cluster_202

Target	Alias	Description	ECC score	Gene Family Method
AT1G22780	No alias	Ribosomal protein S13/S18 family	0.16	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G34030	No alias	Ribosomal protein S13/S18 family	0.16	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G09800	No alias	S18 ribosomal protein	0.2	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g272950	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.44	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g07420.1	No alias	component RPS18 of SSU proteome	0.4	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g02820.1	No alias	component RPS18 of SSU proteome	0.38	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_2800V3.1	No alias	Ribosomal protein S13/S18 family	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_21830V3.1	No alias	Ribosomal protein S13/S18 family	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Pp3c6_21770V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation