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  5. AT2G27900

AT2G27900


Description : CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).


Gene families : OG_01_0003513 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G27900
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cre10.g443350 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g19170.1 No alias EARP-specific component Syndetin-like of GARP/EARP... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_8720V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_16860V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09614.1 No alias EARP-specific component Syndetin-like of GARP/EARP... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006349 regulation of gene expression by genetic imprinting IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006885 regulation of pH IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010071 root meristem specification IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010216 maintenance of DNA methylation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0030641 regulation of cellular pH IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
CC GO:0043076 megasporocyte nucleus IEP HCCA
CC GO:0043078 polar nucleus IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051453 regulation of intracellular pH IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0055047 generative cell mitosis IEP HCCA
BP GO:0055067 monovalent inorganic cation homeostasis IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071514 genetic imprinting IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
BP GO:0080171 lytic vacuole organization IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
BP GO:0140014 mitotic nuclear division IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019514 Syndetin_C 890 1120
IPR019515 VPS54_N 132 421
PLAZA 3.0 Dicots AT2G27900