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  5. Pp3c7_21140V3.1

Pp3c7_21140V3.1


Description : Ribosomal S17 family protein


Gene families : OG_01_0000978 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_21140V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G04390 No alias Ribosomal S17 family protein 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05220 No alias Ribosomal S17 family protein 0.36 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G10610 No alias Ribosomal S17 family protein 0.37 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G04800 No alias Ribosomal S17 family protein 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g498250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g18950.1 No alias component RPS17 of SSU proteome 0.38 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_21070V3.1 No alias Ribosomal S17 family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_11938.1 No alias component eS17 of SSU proteome 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001210 Ribosomal_S17e 1 119
No external refs found!