AT2G28950

Description : expansin A6

Gene families : OG_01_0000011 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G28950
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AT1G69530	No alias	expansin A1	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G55500	No alias	expansin A16	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39280	No alias	expansin A23	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g22700.1	No alias	alpha-class expansin	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g24230.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g26350.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g03890.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g03930.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g06900.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g09770.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06560.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g18860.1	No alias	alpha-class expansin	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_4560V3.1	No alias	expansin A9	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_20360V3.1	No alias	expansin A9	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19660V3.1	No alias	expansin A9	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19720V3.1	No alias	expansin A1	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_5780V3.1	No alias	expansin A15	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_1850V3.1	No alias	expansin A1	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_1940V3.1	No alias	expansin A9	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_760V3.1	No alias	expansin A1	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_16280V3.1	No alias	expansin A14	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_870V3.1	No alias	expansin A1	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006816	calcium ion transport	RCA	Interproscan
BP	GO:0006949	syncytium formation	IEP	Interproscan
BP	GO:0006949	syncytium formation	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007020	microtubule nucleation	RCA	Interproscan
BP	GO:0007030	Golgi organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	NAS	Interproscan
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009828	plant-type cell wall loosening	ISS	Interproscan
BP	GO:0009828	plant-type cell wall loosening	NAS	Interproscan
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004560	alpha-L-fucosidase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
MF	GO:0005504	fatty acid binding	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005982	starch metabolic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010154	fruit development	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
BP	GO:0016143	S-glycoside metabolic process	IEP	HCCA
BP	GO:0016144	S-glycoside biosynthetic process	IEP	HCCA
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	HCCA
BP	GO:0019757	glycosinolate metabolic process	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019760	glucosinolate metabolic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
CC	GO:0031224	intrinsic component of membrane	IEP	HCCA
CC	GO:0031225	anchored component of membrane	IEP	HCCA
CC	GO:0031226	intrinsic component of plasma membrane	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
CC	GO:0046658	anchored component of plasma membrane	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009009	RlpA-like_DPBB	66	152
IPR007117	Expansin_CBD	164	241

External Links

PLAZA 3.0 Dicots	AT2G28950

AT2G28950

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation