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  5. AT1G09910

AT1G09910


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_01_0001162 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09910
Cluster HCCA: Cluster_131


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0005483 soluble NSF attachment protein activity IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009745 sucrose mediated signaling IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019217 regulation of fatty acid metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0042304 regulation of fatty acid biosynthetic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045723 positive regulation of fatty acid biosynthetic process IEP HCCA
BP GO:0045834 positive regulation of lipid metabolic process IEP HCCA
BP GO:0045923 positive regulation of fatty acid metabolic process IEP HCCA
BP GO:0046085 adenosine metabolic process IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046889 positive regulation of lipid biosynthetic process IEP HCCA
BP GO:0046890 regulation of lipid biosynthetic process IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0062013 positive regulation of small molecule metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901957 regulation of cutin biosynthetic process IEP HCCA
BP GO:1901959 positive regulation of cutin biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 396 468
IPR029411 RG-lyase_III 483 670
IPR010325 Rhamnogal_lyase 47 243
PLAZA 3.0 Dicots AT1G09910