Pp3c9_12680V3.1

Description : RNA polymerase II large subunit

Gene families : OG_01_0000079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c9_12680V3.1
Cluster	HCCA: Cluster_190

Target	Alias	Description	ECC score	Gene Family Method
Pp3c11_15740V3.1	No alias	nuclear RNA polymerase A1	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15750V3.1	No alias	uracil dna glycosylase	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_231V3.1	No alias	nuclear RNA polymerase D1A	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4000V3.1	No alias	RNA polymerase II large subunit	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4010V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12590V3.1	No alias	uracil dna glycosylase	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_11510V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_15140V3.1	No alias	RNA polymerase II large subunit	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_270V3.1	No alias	RNA polymerase II large subunit	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_280V3.1	No alias	uracil dna glycosylase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_30040V3.1	No alias	RNA polymerase II large subunit	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_9940V3.1	No alias	RNA polymerase II large subunit	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_10300V3.1	No alias	RNA polymerase II large subunit	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_1950V3.1	No alias	uracil dna glycosylase	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24940V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1410V3.1	No alias	RNA polymerase II large subunit	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15710V3.1	No alias	uracil dna glycosylase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4620V3.1	No alias	RNA polymerase II large subunit	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_110V3.1	No alias	RNA polymerase II large subunit	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	240	315
IPR000722	RNA_pol_asu	1	54
IPR005122	Uracil-DNA_glycosylase-like	384	535
IPR007066	RNA_pol_Rpb1_3	60	184

External Links

No external refs found!

Pp3c9_12680V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation