15.69 15.68 12.68 2.75 0.64 2.97 4.39 1.73 1.15 2.0 1.9 1.57 1.65 3.88 1.98 3.4
Cre16.g681900
133.39 163.67 171.78 163.15 134.61 140.52 126.99 97.37 36.93 25.39 26.31 26.59 28.37 14.95 18.23 29.58 35.64 36.47 36.68 35.31 44.05 56.13 58.22 55.52 61.61 61.07 57.99 72.04 78.49 52.87 39.73 27.02 30.01 37.02 26.38 12.2 9.27 14.63 18.96 27.47 19.22 28.37 26.46 33.42 10.16 5.15 5.44 9.14 11.84 12.01 46.49 37.71 34.83 48.45 23.08 10.28 10.87 6.75 16.51 37.84 42.89 28.61 44.04 62.31 69.38 55.14 33.11 16.16 33.19 18.66 29.52 27.92 15.47 22.51 45.08 46.4 49.5 55.07 57.23 53.91 53.73 10.59 7.27 31.98 20.11 14.7 20.98 62.72 68.5 46.17 10.59 7.27 25.15 28.51 31.98 20.11 14.7 20.98 35.6 30.97 44.53 33.32 44.44
Cre16.g690250
23.62 18.15 14.67 11.97 8.01 7.84 5.68 3.54 3.69 11.54 13.64 10.19 12.14 11.42 15.5 19.63 20.39 23.09 26.82 22.39 23.02 24.12 21.62 19.2 22.25 17.04 16.83 17.33 5.96 3.38 1.15 0.87 1.45 4.5 3.76 1.77 4.97 9.37 6.93 6.04 4.96 8.7 2.68 7.89 2.61 4.84 8.3 8.48 8.08 8.17 14.66 15.85 12.53 9.1 7.08 13.05 13.29 3.25 7.47 9.93 11.31 2.83 4.8 8.66 10.01 6.11 2.65 1.73 7.83 7.14 7.28 7.08 4.38 4.43 6.48 7.61 17.48 9.28 8.23 6.64 7.31 3.18 1.57 2.93 1.66 1.73 2.4 13.67 14.14 7.85 3.18 1.57 1.96 3.35 2.93 1.66 1.73 2.4 5.78 4.83 7.07 4.48 6.11
Cre17.g698450
34.95 74.19 74.56 76.39 67.15 57.78 52.48 44.37 38.29 35.36 40.19 35.84 38.62 27.9 25.9 25.93 24.53 26.77 27.51 25.9 28.46 25.39 24.76 25.38 24.74 23.74 18.84 23.93 26.59 32.96 54.39 59.04 31.68 18.02 23.55 14.07 15.52 17.62 16.64 13.55 9.9 13.76 43.38 31.53 17.08 7.86 7.2 7.9 6.3 8.92 21.39 15.52 19.08 19.01 14.81 8.83 6.94 4.34 4.15 32.47 37.93 31.89 45.71 27.58 29.08 22.06 12.07 6.68 12.5 6.47 17.47 14.4 8.14 8.74 20.21 18.3 24.76 23.22 25.69 22.07 17.63 5.86 2.93 9.95 6.33 6.73 5.07 34.07 39.57 25.55 5.86 2.93 5.65 11.04 9.95 6.33 6.73 5.07 6.9 11.31 15.01 12.39 14.91
Cre17.g732250
112.01 234.7 264.18 211.38 209.41 173.04 149.33 128.24 71.95 30.22 28.95 21.04 26.49 29.04 23.44 29.29 27.19 25.04 24.77 21.0 27.35 25.57 24.34 25.84 22.95 23.33 20.25 30.0 51.38 51.18 66.39 76.92 58.9 26.12 28.73 16.08 4.76 5.19 7.5 Pp3c9_17820V3.1 details
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  5. Pp3c9_17820V3.1

Pp3c9_17820V3.1


Description : uracil dna glycosylase


Gene families : OG_01_0000079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_17820V3.1
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11550V3.1 No alias uracil dna glycosylase 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15750V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_231V3.1 No alias nuclear RNA polymerase D1A 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4010V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19420V3.1 No alias nuclear RNA polymerase A1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_11510V3.1 No alias No annotation 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_270V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_30040V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_9940V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_10300V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_1950V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15710V3.1 No alias uracil dna glycosylase 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4630V3.1 No alias uracil dna glycosylase 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_110V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006313 transposition, DNA-mediated IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032196 transposition IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!