Pp3s67_170V3.1


Description : DNA-directed RNA polymerase family protein


Gene families : OG_01_0000388 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000388_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3s67_170V3.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Pp3c15_19410V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10710V3.1 No alias DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_6070V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_12270V3.1 No alias DNA-directed RNA polymerase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_3310V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_8540V3.1 No alias nuclear RNA polymerase C2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_14800V3.1 No alias DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24950V3.1 No alias nuclear RNA polymerase C2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1420V3.1 No alias nuclear RNA polymerase C2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_18580V3.1 No alias nuclear RNA polymerase A2 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17790V3.1 No alias DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006313 transposition, DNA-mediated IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0032196 transposition IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 177 531
IPR007645 RNA_pol_Rpb2_3 1 35
IPR007641 RNA_pol_Rpb2_7 533 615
No external refs found!