Description : SSU processome assembly factor (TOZ)
Gene families : OG_01_0007297 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007297_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zci_00030.1 | |
Cluster | HCCA: Cluster_83 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G16750 | No alias | Transducin family protein / WD-40 repeat family protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Cre07.g344050 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Mp8g08070.1 | No alias | SSU processome assembly factor (TOZ) | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c19_12460V3.1 | No alias | Transducin family protein / WD-40 repeat family protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
BP | GO:0006364 | rRNA processing | IEA | Interproscan |
CC | GO:0032040 | small-subunit processome | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
CC | GO:0005783 | endoplasmic reticulum | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006873 | cellular ion homeostasis | IEP | HCCA |
BP | GO:0006874 | cellular calcium ion homeostasis | IEP | HCCA |
BP | GO:0006875 | cellular metal ion homeostasis | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0010033 | response to organic substance | IEP | HCCA |
BP | GO:0010243 | response to organonitrogen compound | IEP | HCCA |
BP | GO:0010498 | proteasomal protein catabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019725 | cellular homeostasis | IEP | HCCA |
BP | GO:0030003 | cellular cation homeostasis | IEP | HCCA |
BP | GO:0030163 | protein catabolic process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0032469 | endoplasmic reticulum calcium ion homeostasis | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034976 | response to endoplasmic reticulum stress | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0036503 | ERAD pathway | IEP | HCCA |
BP | GO:0042221 | response to chemical | IEP | HCCA |
BP | GO:0042592 | homeostatic process | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0048878 | chemical homeostasis | IEP | HCCA |
BP | GO:0050801 | ion homeostasis | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0055065 | metal ion homeostasis | IEP | HCCA |
BP | GO:0055074 | calcium ion homeostasis | IEP | HCCA |
BP | GO:0055080 | cation homeostasis | IEP | HCCA |
BP | GO:0055082 | cellular chemical homeostasis | IEP | HCCA |
MF | GO:0071949 | FAD binding | IEP | HCCA |
BP | GO:0072503 | cellular divalent inorganic cation homeostasis | IEP | HCCA |
BP | GO:0072507 | divalent inorganic cation homeostasis | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0098771 | inorganic ion homeostasis | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
BP | GO:1901698 | response to nitrogen compound | IEP | HCCA |
No external refs found! |