1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G32780

AT2G32780


Description : ubiquitin-specific protease 1


Gene families : OG_01_0003657 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003657_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G32780
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Mp7g16560.1 No alias deubiquitinase (UBP1-2) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent deubiquitinase ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0000404 heteroduplex DNA loop binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005945 6-phosphofructokinase complex IEP HCCA
BP GO:0006011 UDP-glucose metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006323 DNA packaging IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0010032 meiotic chromosome condensation IEP HCCA
MF GO:0010491 UTP:arabinose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017103 UTP:galactose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
BP GO:0033356 UDP-L-arabinose metabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046398 UDP-glucuronate metabolic process IEP HCCA
MF GO:0047268 galactinol-raffinose galactosyltransferase activity IEP HCCA
MF GO:0047338 UTP:xylose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0047350 glucuronate-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
MF GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0052573 UDP-D-galactose metabolic process IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 56 147
IPR001394 Peptidase_C19_UCH 202 1080
PLAZA 3.0 Dicots AT2G32780