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  5. Zci_01903.1

Zci_01903.1


Description : component RPP2 of LSU proteome component


Gene families : OG_01_0000714 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_01903.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT2G27710 No alias 60S acidic ribosomal protein family 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G27720 No alias 60S acidic ribosomal protein family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44590 No alias 60S acidic ribosomal protein family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g143050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g06260.1 No alias component RPP2 of LSU proteome component 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g08160.1 No alias component RPP2 of LSU proteome component 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g18620.1 No alias component RPP2 of LSU proteome component 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_2900V3.1 No alias 60S acidic ribosomal protein family 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_7080V3.1 No alias 60S acidic ribosomal protein family 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_27060V3.1 No alias 60S acidic ribosomal protein family 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_15480V3.1 No alias 60S acidic ribosomal protein family 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_20310V3.1 No alias 60S acidic ribosomal protein family 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
BP GO:0034471 ncRNA 5'-end processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!