Coexpression cluster: Cluster_28 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003677 DNA binding 6.76% (5/74) 3.51 8e-05 0.003858
GO:0097747 RNA polymerase activity 4.05% (3/74) 4.32 0.00047 0.004554
GO:0034062 5'-3' RNA polymerase activity 4.05% (3/74) 4.32 0.00047 0.004554
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.05% (3/74) 4.32 0.00047 0.004554
GO:0016772 transferase activity, transferring phosphorus-containing groups 8.11% (6/74) 3.21 4.9e-05 0.004736
GO:0016779 nucleotidyltransferase activity 4.05% (3/74) 4.06 0.000794 0.004816
GO:0006351 transcription, DNA-templated 4.05% (3/74) 4.11 0.00071 0.004917
GO:0097659 nucleic acid-templated transcription 4.05% (3/74) 4.11 0.00071 0.004917
GO:0090304 nucleic acid metabolic process 5.41% (4/74) 3.29 0.000762 0.004926
GO:0032774 RNA biosynthetic process 4.05% (3/74) 3.99 0.000917 0.005232
GO:0008152 metabolic process 12.16% (9/74) 1.9 0.000669 0.005406
GO:0044260 cellular macromolecule metabolic process 9.46% (7/74) 2.27 0.000615 0.00542
GO:0016740 transferase activity 8.11% (6/74) 2.68 0.000361 0.005835
GO:0003676 nucleic acid binding 8.11% (6/74) 2.7 0.000325 0.006309
GO:0008150 biological_process 14.86% (11/74) 1.72 0.000456 0.006318
GO:0044238 primary metabolic process 12.16% (9/74) 2.11 0.000226 0.007317
GO:0071704 organic substance metabolic process 12.16% (9/74) 2.05 0.000308 0.007465
GO:0034654 nucleobase-containing compound biosynthetic process 4.05% (3/74) 3.72 0.00157 0.007612
GO:0140098 catalytic activity, acting on RNA 4.05% (3/74) 3.72 0.00157 0.007612
GO:1901360 organic cyclic compound metabolic process 5.41% (4/74) 2.89 0.002138 0.007679
GO:0006139 nucleobase-containing compound metabolic process 5.41% (4/74) 2.98 0.001685 0.007785
GO:1901362 organic cyclic compound biosynthetic process 4.05% (3/74) 3.52 0.002339 0.007823
GO:0018130 heterocycle biosynthetic process 4.05% (3/74) 3.57 0.002115 0.00789
GO:0003700 DNA-binding transcription factor activity 2.7% (2/74) 4.82 0.002284 0.007914
GO:0003674 molecular_function 17.57% (13/74) 1.3 0.00205 0.007955
GO:0043170 macromolecule metabolic process 9.46% (7/74) 2.05 0.001481 0.007979
GO:0006725 cellular aromatic compound metabolic process 5.41% (4/74) 2.91 0.002041 0.008249
GO:0046483 heterocycle metabolic process 5.41% (4/74) 2.91 0.00201 0.008475
GO:0006807 nitrogen compound metabolic process 9.46% (7/74) 1.91 0.002622 0.008478
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 2.7% (2/74) 4.65 0.002906 0.008809
GO:0140640 catalytic activity, acting on a nucleic acid 4.05% (3/74) 3.42 0.00283 0.008854
GO:0019438 aromatic compound biosynthetic process 4.05% (3/74) 3.59 0.002008 0.008854
GO:0016798 hydrolase activity, acting on glycosyl bonds 2.7% (2/74) 4.57 0.003243 0.009533
GO:0097159 organic cyclic compound binding 9.46% (7/74) 1.81 0.003871 0.010727
GO:1901363 heterocyclic compound binding 9.46% (7/74) 1.81 0.003871 0.010727
GO:0140110 transcription regulator activity 2.7% (2/74) 4.38 0.004162 0.010911
GO:0016070 RNA metabolic process 4.05% (3/74) 3.23 0.004071 0.010969
GO:0006270 DNA replication initiation 1.35% (1/74) 7.78 0.004555 0.011328
GO:0003824 catalytic activity 10.81% (8/74) 1.61 0.00455 0.011614
GO:0044237 cellular metabolic process 9.46% (7/74) 1.75 0.00484 0.011736
GO:0031323 regulation of cellular metabolic process 2.7% (2/74) 3.69 0.010599 0.017426
GO:0060255 regulation of macromolecule metabolic process 2.7% (2/74) 3.69 0.010599 0.017426
GO:0016301 kinase activity 4.05% (3/74) 2.75 0.010267 0.017472
GO:0016310 phosphorylation 4.05% (3/74) 2.75 0.010267 0.017472
GO:0016773 phosphotransferase activity, alcohol group as acceptor 4.05% (3/74) 2.75 0.010267 0.017472
GO:0019222 regulation of metabolic process 2.7% (2/74) 3.67 0.0109 0.017621
GO:0031326 regulation of cellular biosynthetic process 2.7% (2/74) 3.73 0.01001 0.017981
GO:2000112 regulation of cellular macromolecule biosynthetic process 2.7% (2/74) 3.73 0.01001 0.017981
GO:0051171 regulation of nitrogen compound metabolic process 2.7% (2/74) 3.73 0.01001 0.017981
GO:0009889 regulation of biosynthetic process 2.7% (2/74) 3.73 0.01001 0.017981
GO:0010468 regulation of gene expression 2.7% (2/74) 3.73 0.01001 0.017981
GO:0010556 regulation of macromolecule biosynthetic process 2.7% (2/74) 3.73 0.01001 0.017981
GO:0080090 regulation of primary metabolic process 2.7% (2/74) 3.73 0.01001 0.017981
GO:0006468 protein phosphorylation 4.05% (3/74) 2.89 0.007784 0.018415
GO:0004672 protein kinase activity 4.05% (3/74) 2.86 0.008273 0.019107
GO:0019219 regulation of nucleobase-containing compound metabolic process 2.7% (2/74) 3.75 0.009721 0.020062
GO:0006355 regulation of transcription, DNA-templated 2.7% (2/74) 3.75 0.009721 0.020062
GO:2001141 regulation of RNA biosynthetic process 2.7% (2/74) 3.75 0.009721 0.020062
GO:1903506 regulation of nucleic acid-templated transcription 2.7% (2/74) 3.75 0.009721 0.020062
GO:0051252 regulation of RNA metabolic process 2.7% (2/74) 3.75 0.009721 0.020062
GO:0005975 carbohydrate metabolic process 2.7% (2/74) 3.53 0.013107 0.020842
GO:0036211 protein modification process 4.05% (3/74) 2.5 0.016106 0.024798
GO:0006464 cellular protein modification process 4.05% (3/74) 2.5 0.016106 0.024798
GO:0006793 phosphorus metabolic process 4.05% (3/74) 2.45 0.01761 0.025881
GO:0043412 macromolecule modification 4.05% (3/74) 2.45 0.01761 0.025881
GO:0006796 phosphate-containing compound metabolic process 4.05% (3/74) 2.45 0.01761 0.025881
GO:0009987 cellular process 9.46% (7/74) 1.37 0.018554 0.026862
GO:0034641 cellular nitrogen compound metabolic process 5.41% (4/74) 1.86 0.024622 0.035123
GO:0005488 binding 9.46% (7/74) 1.25 0.027364 0.037919
GO:0050794 regulation of cellular process 2.7% (2/74) 2.97 0.027125 0.038132
GO:0050789 regulation of biological process 2.7% (2/74) 2.93 0.02848 0.038909
GO:0065007 biological regulation 2.7% (2/74) 2.86 0.031269 0.04155
GO:0140096 catalytic activity, acting on a protein 4.05% (3/74) 2.14 0.031058 0.041842
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Marchantia polymorpha HCCA Cluster_89 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_129 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_152 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_2 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_6 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_10 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_11 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_13 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_38 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_40 0.044 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_42 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_43 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_45 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_60 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_61 0.049 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_65 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_66 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_73 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_74 0.062 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_75 0.048 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_78 0.051 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_80 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_81 0.039 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_83 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_87 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_88 0.034 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_89 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_90 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_91 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_96 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_98 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_108 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_109 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_122 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_127 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_128 0.043 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_129 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_137 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_158 0.057 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_159 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_165 0.075 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_172 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_179 0.039 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_181 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_190 0.049 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_215 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_221 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_225 0.034 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_227 0.046 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_233 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_236 0.048 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_241 0.043 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_263 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_301 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_309 0.043 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (74) (download table)

InterPro Domains

GO Terms

Family Terms