Coexpression cluster: Cluster_25 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 33.33% (31/93) 2.77 0.0 0.0
GO:0044391 ribosomal subunit 16.13% (15/93) 3.93 0.0 0.0
GO:1990904 ribonucleoprotein complex 16.13% (15/93) 3.68 0.0 0.0
GO:0043043 peptide biosynthetic process 16.13% (15/93) 3.6 0.0 0.0
GO:0003735 structural constituent of ribosome 16.13% (15/93) 3.64 0.0 0.0
GO:0006412 translation 16.13% (15/93) 3.61 0.0 0.0
GO:0006518 peptide metabolic process 16.13% (15/93) 3.55 0.0 0.0
GO:0043604 amide biosynthetic process 16.13% (15/93) 3.5 0.0 0.0
GO:0005198 structural molecule activity 16.13% (15/93) 3.3 0.0 0.0
GO:0098803 respiratory chain complex 9.68% (9/93) 4.64 0.0 0.0
GO:0022627 cytosolic small ribosomal subunit 9.68% (9/93) 4.69 0.0 0.0
GO:0043603 cellular amide metabolic process 16.13% (15/93) 3.19 0.0 0.0
GO:0005840 ribosome 13.98% (13/93) 3.54 0.0 0.0
GO:1990204 oxidoreductase complex 9.68% (9/93) 4.4 0.0 0.0
GO:0015935 small ribosomal subunit 9.68% (9/93) 4.34 0.0 0.0
GO:1990351 transporter complex 8.6% (8/93) 4.65 0.0 0.0
GO:1902495 transmembrane transporter complex 8.6% (8/93) 4.65 0.0 0.0
GO:0098800 inner mitochondrial membrane protein complex 9.68% (9/93) 4.26 0.0 0.0
GO:0098798 mitochondrial protein-containing complex 9.68% (9/93) 4.11 0.0 0.0
GO:0043228 non-membrane-bounded organelle 16.13% (15/93) 2.69 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 16.13% (15/93) 2.69 0.0 0.0
GO:1902494 catalytic complex 13.98% (13/93) 2.89 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 19.35% (18/93) 2.06 0.0 5e-06
GO:0006407 rRNA export from nucleus 3.23% (3/93) 7.48 0.0 6e-06
GO:0051029 rRNA transport 3.23% (3/93) 7.48 0.0 6e-06
GO:0045275 respiratory chain complex III 4.3% (4/93) 6.05 0.0 7e-06
GO:0005750 mitochondrial respiratory chain complex III 4.3% (4/93) 6.05 0.0 7e-06
GO:0098796 membrane protein complex 10.75% (10/93) 3.03 0.0 7e-06
GO:0044271 cellular nitrogen compound biosynthetic process 18.28% (17/93) 2.04 1e-06 1e-05
GO:0009853 photorespiration 7.53% (7/93) 3.71 1e-06 1.8e-05
GO:0097064 ncRNA export from nucleus 3.23% (3/93) 6.99 1e-06 1.9e-05
GO:0009059 macromolecule biosynthetic process 19.35% (18/93) 1.88 1e-06 2.1e-05
GO:0070069 cytochrome complex 4.3% (4/93) 5.46 2e-06 2.8e-05
GO:0043094 cellular metabolic compound salvage 7.53% (7/93) 3.52 3e-06 3.7e-05
GO:0005739 mitochondrion 29.03% (27/93) 1.28 7e-06 9.5e-05
GO:0015934 large ribosomal subunit 6.45% (6/93) 3.48 1.7e-05 0.000221
GO:1901566 organonitrogen compound biosynthetic process 16.13% (15/93) 1.66 7.1e-05 0.00089
GO:0005747 mitochondrial respiratory chain complex I 4.3% (4/93) 4.13 8.3e-05 0.001011
GO:0045271 respiratory chain complex I 4.3% (4/93) 4.05 0.000103 0.001201
GO:0030964 NADH dehydrogenase complex 4.3% (4/93) 4.05 0.000103 0.001201
GO:0043226 organelle 78.49% (73/93) 0.37 0.000209 0.002312
GO:0043229 intracellular organelle 78.49% (73/93) 0.37 0.000206 0.002331
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 3.23% (3/93) 4.48 0.000332 0.003586
GO:0042254 ribosome biogenesis 4.3% (4/93) 3.5 0.000442 0.00466
GO:0044267 cellular protein metabolic process 17.2% (16/93) 1.33 0.000555 0.005595
GO:0022613 ribonucleoprotein complex biogenesis 4.3% (4/93) 3.42 0.000545 0.005622
GO:0046907 intracellular transport 11.83% (11/93) 1.68 0.000643 0.006348
GO:0000418 RNA polymerase IV complex 2.15% (2/93) 5.63 0.000722 0.006983
GO:0022625 cytosolic large ribosomal subunit 4.3% (4/93) 3.3 0.000754 0.007139
GO:0000419 RNA polymerase V complex 2.15% (2/93) 5.52 0.000852 0.00775
GO:0015931 nucleobase-containing compound transport 4.3% (4/93) 3.25 0.000851 0.007901
GO:0016675 oxidoreductase activity, acting on a heme group of donors 2.15% (2/93) 5.41 0.000992 0.008681
GO:0004129 cytochrome-c oxidase activity 2.15% (2/93) 5.41 0.000992 0.008681
GO:0005665 RNA polymerase II, core complex 2.15% (2/93) 5.22 0.001302 0.010984
GO:0051649 establishment of localization in cell 11.83% (11/93) 1.55 0.001284 0.011035
GO:0051236 establishment of RNA localization 3.23% (3/93) 3.71 0.001575 0.012388
GO:0050658 RNA transport 3.23% (3/93) 3.71 0.001575 0.012388
GO:0050657 nucleic acid transport 3.23% (3/93) 3.71 0.001575 0.012388
GO:0006405 RNA export from nucleus 3.23% (3/93) 3.71 0.001575 0.012388
GO:0051168 nuclear export 3.23% (3/93) 3.65 0.001783 0.013791
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2.15% (2/93) 4.82 0.002254 0.017142
GO:0051641 cellular localization 11.83% (11/93) 1.42 0.00262 0.019605
GO:0001510 RNA methylation 4.3% (4/93) 2.79 0.002744 0.019894
GO:0045259 proton-transporting ATP synthase complex 2.15% (2/93) 4.69 0.002703 0.019909
GO:0016469 proton-transporting two-sector ATPase complex 2.15% (2/93) 4.63 0.002943 0.021005
GO:0000428 DNA-directed RNA polymerase complex 2.15% (2/93) 4.57 0.003191 0.021777
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.15% (2/93) 4.57 0.003191 0.021777
GO:0030880 RNA polymerase complex 2.15% (2/93) 4.57 0.003191 0.021777
GO:0031083 BLOC-1 complex 1.08% (1/93) 8.22 0.003363 0.021977
GO:0031082 BLOC complex 1.08% (1/93) 8.22 0.003363 0.021977
GO:0033617 mitochondrial cytochrome c oxidase assembly 1.08% (1/93) 8.22 0.003363 0.021977
GO:0140513 nuclear protein-containing complex 4.3% (4/93) 2.66 0.003772 0.024307
GO:0003674 molecular_function 84.95% (79/93) 0.22 0.003898 0.024776
GO:0044260 cellular macromolecule metabolic process 22.58% (21/93) 0.86 0.004596 0.028431
GO:0009055 electron transfer activity 3.23% (3/93) 3.17 0.004574 0.02868
GO:0006626 protein targeting to mitochondrion 3.23% (3/93) 3.11 0.005108 0.031184
GO:0072655 establishment of protein localization to mitochondrion 3.23% (3/93) 3.09 0.005388 0.032052
GO:0070585 protein localization to mitochondrion 3.23% (3/93) 3.09 0.005388 0.032052
GO:0019538 protein metabolic process 18.28% (17/93) 0.96 0.005702 0.033489
GO:0051418 microtubule nucleation by microtubule organizing center 1.08% (1/93) 7.22 0.006715 0.038463
GO:0033108 mitochondrial respiratory chain complex assembly 1.08% (1/93) 7.22 0.006715 0.038463
GO:0061695 transferase complex, transferring phosphorus-containing groups 2.15% (2/93) 3.82 0.008826 0.049944
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_4 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_16 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_123 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_173 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_332 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_23 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_93 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_119 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_151 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_176 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_4 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_5 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_9 0.062 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_67 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_83 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_105 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_113 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_118 0.083 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_154 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_155 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_166 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_175 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_6 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_31 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_48 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_67 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_112 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_115 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_134 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_164 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_185 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_210 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_211 0.051 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_224 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_228 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_246 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_293 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_90 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_137 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (93) (download table)

InterPro Domains

GO Terms

Family Terms