Coexpression cluster: Cluster_53 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1990904 ribonucleoprotein complex 64.0% (32/50) 5.67 0.0 0.0
GO:0003735 structural constituent of ribosome 62.0% (31/50) 5.58 0.0 0.0
GO:0005198 structural molecule activity 62.0% (31/50) 5.24 0.0 0.0
GO:0005840 ribosome 56.0% (28/50) 5.54 0.0 0.0
GO:0044391 ribosomal subunit 54.0% (27/50) 5.68 0.0 0.0
GO:0006412 translation 56.0% (28/50) 5.41 0.0 0.0
GO:0043043 peptide biosynthetic process 56.0% (28/50) 5.39 0.0 0.0
GO:0006518 peptide metabolic process 56.0% (28/50) 5.34 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 64.0% (32/50) 4.67 0.0 0.0
GO:0043228 non-membrane-bounded organelle 64.0% (32/50) 4.67 0.0 0.0
GO:0043604 amide biosynthetic process 56.0% (28/50) 5.3 0.0 0.0
GO:0043603 cellular amide metabolic process 56.0% (28/50) 4.98 0.0 0.0
GO:0032991 protein-containing complex 64.0% (32/50) 3.71 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 34.0% (17/50) 6.28 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 60.0% (30/50) 3.7 0.0 0.0
GO:0015934 large ribosomal subunit 34.0% (17/50) 5.88 0.0 0.0
GO:0009059 macromolecule biosynthetic process 60.0% (30/50) 3.51 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 56.0% (28/50) 3.66 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 56.0% (28/50) 3.46 0.0 0.0
GO:0022626 cytosolic ribosome 32.0% (16/50) 5.52 0.0 0.0
GO:0044267 cellular protein metabolic process 60.0% (30/50) 3.13 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 68.0% (34/50) 2.45 0.0 0.0
GO:0019538 protein metabolic process 60.0% (30/50) 2.67 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 60.0% (30/50) 2.48 0.0 0.0
GO:0044249 cellular biosynthetic process 62.0% (31/50) 2.29 0.0 0.0
GO:0043170 macromolecule metabolic process 68.0% (34/50) 2.05 0.0 0.0
GO:0022627 cytosolic small ribosomal subunit 20.0% (10/50) 5.73 0.0 0.0
GO:1901576 organic substance biosynthetic process 62.0% (31/50) 2.14 0.0 0.0
GO:0009058 biosynthetic process 62.0% (31/50) 2.09 0.0 0.0
GO:0015935 small ribosomal subunit 20.0% (10/50) 5.39 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 60.0% (30/50) 2.06 0.0 0.0
GO:0042254 ribosome biogenesis 18.0% (9/50) 5.57 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 18.0% (9/50) 5.49 0.0 0.0
GO:0006807 nitrogen compound metabolic process 64.0% (32/50) 1.79 0.0 0.0
GO:0001510 RNA methylation 18.0% (9/50) 4.86 0.0 0.0
GO:0044237 cellular metabolic process 70.0% (35/50) 1.47 0.0 0.0
GO:0005737 cytoplasm 50.0% (25/50) 2.03 0.0 0.0
GO:0044238 primary metabolic process 66.0% (33/50) 1.53 0.0 0.0
GO:0071704 organic substance metabolic process 70.0% (35/50) 1.41 0.0 0.0
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 10.0% (5/50) 6.73 0.0 0.0
GO:0008152 metabolic process 70.0% (35/50) 1.29 0.0 0.0
GO:0044085 cellular component biogenesis 18.0% (9/50) 4.08 0.0 0.0
GO:0009451 RNA modification 18.0% (9/50) 3.94 0.0 0.0
GO:0030054 cell junction 24.0% (12/50) 2.96 0.0 0.0
GO:0005911 cell-cell junction 24.0% (12/50) 2.96 0.0 0.0
GO:0070161 anchoring junction 24.0% (12/50) 2.96 0.0 0.0
GO:0009506 plasmodesma 24.0% (12/50) 2.96 0.0 0.0
GO:0005730 nucleolus 16.0% (8/50) 3.94 0.0 0.0
GO:0032259 methylation 18.0% (9/50) 3.3 0.0 1e-06
GO:0043414 macromolecule methylation 18.0% (9/50) 3.3 0.0 1e-06
GO:0043226 organelle 92.0% (46/50) 0.6 1e-06 3e-06
GO:0043229 intracellular organelle 92.0% (46/50) 0.6 1e-06 3e-06
GO:0009987 cellular process 70.0% (35/50) 0.94 2e-06 7e-06
GO:0005829 cytosol 26.0% (13/50) 2.27 2e-06 8e-06
GO:0006414 translational elongation 6.0% (3/50) 5.65 2.9e-05 0.000128
GO:0043412 macromolecule modification 24.0% (12/50) 1.85 8.3e-05 0.000357
GO:0016070 RNA metabolic process 20.0% (10/50) 2.0 0.000157 0.000662
GO:0005774 vacuolar membrane 12.0% (6/50) 2.79 0.000221 0.000916
GO:0016925 protein sumoylation 4.0% (2/50) 5.94 0.000481 0.001965
GO:0098588 bounding membrane of organelle 12.0% (6/50) 2.55 0.000535 0.002147
GO:0090304 nucleic acid metabolic process 20.0% (10/50) 1.58 0.001503 0.005938
GO:0006139 nucleobase-containing compound metabolic process 22.0% (11/50) 1.34 0.0032 0.012437
GO:0005618 cell wall 10.0% (5/50) 2.26 0.003826 0.014638
GO:0030312 external encapsulating structure 10.0% (5/50) 2.24 0.004085 0.015383
GO:0032446 protein modification by small protein conjugation 6.0% (3/50) 2.98 0.006593 0.024446
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.0% (1/50) 7.11 0.007213 0.025563
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.0% (1/50) 7.11 0.007213 0.025563
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.0% (1/50) 7.11 0.007213 0.025563
GO:0003674 molecular_function 88.0% (44/50) 0.28 0.007934 0.027712
GO:0071493 cellular response to UV-B 2.0% (1/50) 6.79 0.009008 0.030152
GO:0031125 rRNA 3'-end processing 2.0% (1/50) 6.79 0.009008 0.030152
GO:0004550 nucleoside diphosphate kinase activity 2.0% (1/50) 6.79 0.009008 0.030152
GO:0046483 heterocycle metabolic process 22.0% (11/50) 1.12 0.010083 0.033287
GO:0031090 organelle membrane 12.0% (6/50) 1.65 0.011497 0.037442
GO:0042274 ribosomal small subunit biogenesis 2.0% (1/50) 6.3 0.012589 0.040452
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_134 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_164 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_207 0.155 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.063 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_80 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_93 0.169 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_97 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_5 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_8 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_9 0.163 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_132 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_141 0.087 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_155 0.056 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_31 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_48 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_58 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_115 0.221 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_134 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_152 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_202 0.143 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_211 0.093 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_246 0.082 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_14 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_56 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_69 0.068 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_98 0.046 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_138 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms