Coexpression cluster: Cluster_107 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006354 DNA-templated transcription, elongation 70.59% (36/51) 7.3 0.0 0.0
GO:0032774 RNA biosynthetic process 70.59% (36/51) 6.01 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 78.43% (40/51) 5.18 0.0 0.0
GO:0015979 photosynthesis 76.47% (39/51) 6.81 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 70.59% (36/51) 5.01 0.0 0.0
GO:0019684 photosynthesis, light reaction 47.06% (24/51) 6.46 0.0 0.0
GO:0018130 heterocycle biosynthetic process 70.59% (36/51) 4.31 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 72.55% (37/51) 4.03 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 70.59% (36/51) 3.98 0.0 0.0
GO:0009059 macromolecule biosynthetic process 72.55% (37/51) 3.78 0.0 0.0
GO:0016070 RNA metabolic process 70.59% (36/51) 3.82 0.0 0.0
GO:0009507 chloroplast 90.2% (46/51) 2.74 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 70.59% (36/51) 3.72 0.0 0.0
GO:0009536 plastid 90.2% (46/51) 2.71 0.0 0.0
GO:0090304 nucleic acid metabolic process 70.59% (36/51) 3.4 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 70.59% (36/51) 3.02 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 39.22% (20/51) 5.11 0.0 0.0
GO:0055035 plastid thylakoid membrane 39.22% (20/51) 5.1 0.0 0.0
GO:0042651 thylakoid membrane 39.22% (20/51) 5.05 0.0 0.0
GO:0034357 photosynthetic membrane 39.22% (20/51) 5.05 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 72.55% (37/51) 2.76 0.0 0.0
GO:0046483 heterocycle metabolic process 70.59% (36/51) 2.8 0.0 0.0
GO:0042170 plastid membrane 39.22% (20/51) 4.78 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 70.59% (36/51) 2.65 0.0 0.0
GO:0044249 cellular biosynthetic process 72.55% (37/51) 2.52 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 70.59% (36/51) 2.58 0.0 0.0
GO:0031976 plastid thylakoid 31.37% (16/51) 5.35 0.0 0.0
GO:0009534 chloroplast thylakoid 31.37% (16/51) 5.35 0.0 0.0
GO:1901576 organic substance biosynthetic process 72.55% (37/51) 2.36 0.0 0.0
GO:0009579 thylakoid 33.33% (17/51) 4.82 0.0 0.0
GO:0009058 biosynthetic process 72.55% (37/51) 2.32 0.0 0.0
GO:0043170 macromolecule metabolic process 72.55% (37/51) 2.14 0.0 0.0
GO:0005622 intracellular anatomical structure 33.33% (17/51) 4.42 0.0 0.0
GO:0010207 photosystem II assembly 25.49% (13/51) 5.32 0.0 0.0
GO:0032991 protein-containing complex 45.1% (23/51) 3.2 0.0 0.0
GO:0006807 nitrogen compound metabolic process 72.55% (37/51) 1.97 0.0 0.0
GO:0031984 organelle subcompartment 31.37% (16/51) 4.25 0.0 0.0
GO:0031090 organelle membrane 39.22% (20/51) 3.36 0.0 0.0
GO:0044237 cellular metabolic process 78.43% (40/51) 1.63 0.0 0.0
GO:0044238 primary metabolic process 72.55% (37/51) 1.66 0.0 0.0
GO:0098796 membrane protein complex 25.49% (13/51) 4.28 0.0 0.0
GO:0008152 metabolic process 78.43% (40/51) 1.46 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 15.69% (8/51) 5.85 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 25.49% (13/51) 3.96 0.0 0.0
GO:0065003 protein-containing complex assembly 25.49% (13/51) 3.9 0.0 0.0
GO:0046906 tetrapyrrole binding 13.73% (7/51) 6.34 0.0 0.0
GO:0043933 protein-containing complex subunit organization 25.49% (13/51) 3.86 0.0 0.0
GO:0071704 organic substance metabolic process 72.55% (37/51) 1.46 0.0 0.0
GO:0000312 plastid small ribosomal subunit 9.8% (5/51) 7.32 0.0 0.0
GO:0003959 NADPH dehydrogenase activity 7.84% (4/51) 8.28 0.0 0.0
GO:0022607 cellular component assembly 25.49% (13/51) 3.3 0.0 0.0
GO:0045333 cellular respiration 13.73% (7/51) 5.32 0.0 0.0
GO:0015980 energy derivation by oxidation of organic compounds 13.73% (7/51) 5.32 0.0 0.0
GO:0000314 organellar small ribosomal subunit 9.8% (5/51) 6.76 0.0 0.0
GO:0009987 cellular process 78.43% (40/51) 1.1 0.0 0.0
GO:0009767 photosynthetic electron transport chain 11.76% (6/51) 5.65 0.0 0.0
GO:0010287 plastoglobule 11.76% (6/51) 5.58 0.0 0.0
GO:0043227 membrane-bounded organelle 96.08% (49/51) 0.68 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 96.08% (49/51) 0.68 0.0 0.0
GO:0016168 chlorophyll binding 9.8% (5/51) 6.4 0.0 0.0
GO:0043229 intracellular organelle 96.08% (49/51) 0.66 0.0 0.0
GO:0043226 organelle 96.08% (49/51) 0.66 0.0 0.0
GO:0022900 electron transport chain 11.76% (6/51) 5.16 0.0 0.0
GO:0009512 cytochrome b6f complex 5.88% (3/51) 8.35 0.0 0.0
GO:0009521 photosystem 7.84% (4/51) 6.22 0.0 1e-06
GO:0016020 membrane 47.06% (24/51) 1.47 1e-06 4e-06
GO:0009538 photosystem I reaction center 5.88% (3/51) 7.21 1e-06 6e-06
GO:0044391 ribosomal subunit 13.73% (7/51) 3.7 1e-06 6e-06
GO:0009765 photosynthesis, light harvesting 5.88% (3/51) 6.86 2e-06 1.2e-05
GO:0009773 photosynthetic electron transport in photosystem I 7.84% (4/51) 5.44 2e-06 1.2e-05
GO:1990904 ribonucleoprotein complex 13.73% (7/51) 3.45 3e-06 1.8e-05
GO:0015935 small ribosomal subunit 9.8% (5/51) 4.36 5e-06 2.4e-05
GO:0006412 translation 13.73% (7/51) 3.38 5e-06 2.4e-05
GO:0043043 peptide biosynthetic process 13.73% (7/51) 3.36 5e-06 2.6e-05
GO:0006518 peptide metabolic process 13.73% (7/51) 3.31 6e-06 3.2e-05
GO:0043604 amide biosynthetic process 13.73% (7/51) 3.27 7e-06 3.8e-05
GO:0009523 photosystem II 5.88% (3/51) 6.14 1e-05 5.1e-05
GO:0009570 chloroplast stroma 15.69% (8/51) 2.88 1.1e-05 5.6e-05
GO:0009532 plastid stroma 15.69% (8/51) 2.88 1.1e-05 5.6e-05
GO:0016491 oxidoreductase activity 19.61% (10/51) 2.44 1.2e-05 6e-05
GO:0070069 cytochrome complex 5.88% (3/51) 5.91 1.7e-05 8e-05
GO:0009539 photosystem II reaction center 3.92% (2/51) 8.08 2e-05 9.4e-05
GO:0098807 chloroplast thylakoid membrane protein complex 5.88% (3/51) 5.71 2.6e-05 0.000119
GO:0043603 cellular amide metabolic process 13.73% (7/51) 2.95 3.1e-05 0.000142
GO:1901566 organonitrogen compound biosynthetic process 21.57% (11/51) 2.08 4.3e-05 0.000194
GO:0009769 photosynthesis, light harvesting in photosystem II 3.92% (2/51) 7.5 5e-05 0.000223
GO:0003735 structural constituent of ribosome 11.76% (6/51) 3.18 5.1e-05 0.000224
GO:0009941 chloroplast envelope 13.73% (7/51) 2.82 5.5e-05 0.00024
GO:0009526 plastid envelope 13.73% (7/51) 2.81 5.8e-05 0.000251
GO:0009533 chloroplast stromal thylakoid 3.92% (2/51) 7.08 9.3e-05 0.000398
GO:0009295 nucleoid 5.88% (3/51) 5.08 9.6e-05 0.000409
GO:0031975 envelope 13.73% (7/51) 2.66 0.000113 0.000468
GO:0031967 organelle envelope 13.73% (7/51) 2.66 0.000113 0.000468
GO:0016779 nucleotidyltransferase activity 7.84% (4/51) 3.93 0.000138 0.000567
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 5.88% (3/51) 4.83 0.000161 0.000655
GO:0005198 structural molecule activity 11.76% (6/51) 2.84 0.00018 0.000725
GO:0071840 cellular component organization or biogenesis 27.45% (14/51) 1.54 0.000196 0.000778
GO:0034062 5'-3' RNA polymerase activity 5.88% (3/51) 4.69 0.000217 0.000846
GO:0097747 RNA polymerase activity 5.88% (3/51) 4.69 0.000217 0.000846
GO:0020037 heme binding 3.92% (2/51) 6.38 0.000257 0.000981
GO:0009654 photosystem II oxygen evolving complex 3.92% (2/51) 6.38 0.000257 0.000981
GO:0016043 cellular component organization 25.49% (13/51) 1.56 0.000311 0.001176
GO:0000311 plastid large ribosomal subunit 3.92% (2/51) 6.0 0.000446 0.001638
GO:0009145 purine nucleoside triphosphate biosynthetic process 3.92% (2/51) 6.0 0.000446 0.001638
GO:0009144 purine nucleoside triphosphate metabolic process 3.92% (2/51) 6.0 0.000446 0.001638
GO:0009142 nucleoside triphosphate biosynthetic process 3.92% (2/51) 5.91 0.000501 0.001806
GO:0009141 nucleoside triphosphate metabolic process 3.92% (2/51) 5.91 0.000501 0.001806
GO:0030095 chloroplast photosystem II 3.92% (2/51) 5.83 0.000559 0.001979
GO:0015252 proton channel activity 3.92% (2/51) 5.83 0.000559 0.001979
GO:0000315 organellar large ribosomal subunit 3.92% (2/51) 5.69 0.000685 0.002403
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity 1.96% (1/51) 9.08 0.001844 0.006413
GO:0003954 NADH dehydrogenase activity 3.92% (2/51) 4.91 0.002018 0.006955
GO:0046385 deoxyribose phosphate biosynthetic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0046060 dATP metabolic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0006175 dATP biosynthetic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0009151 purine deoxyribonucleotide metabolic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0009153 purine deoxyribonucleotide biosynthetic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0009215 purine deoxyribonucleoside triphosphate metabolic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0009216 purine deoxyribonucleoside triphosphate biosynthetic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0009263 deoxyribonucleotide biosynthetic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0009265 2'-deoxyribonucleotide biosynthetic process 1.96% (1/51) 8.08 0.003685 0.011659
GO:0006176 dATP biosynthetic process from ADP 1.96% (1/51) 8.08 0.003685 0.011659
GO:0005261 cation channel activity 3.92% (2/51) 4.33 0.004488 0.014084
GO:0008150 biological_process 90.2% (46/51) 0.27 0.004755 0.014802
GO:0140640 catalytic activity, acting on a nucleic acid 7.84% (4/51) 2.53 0.005081 0.01569
GO:0042776 mitochondrial ATP synthesis coupled proton transport 1.96% (1/51) 7.5 0.005522 0.016149
GO:0009262 deoxyribonucleotide metabolic process 1.96% (1/51) 7.5 0.005522 0.016149
GO:0009200 deoxyribonucleoside triphosphate metabolic process 1.96% (1/51) 7.5 0.005522 0.016149
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 1.96% (1/51) 7.5 0.005522 0.016149
GO:0009394 2'-deoxyribonucleotide metabolic process 1.96% (1/51) 7.5 0.005522 0.016149
GO:1990542 mitochondrial transmembrane transport 1.96% (1/51) 7.5 0.005522 0.016149
GO:0019692 deoxyribose phosphate metabolic process 1.96% (1/51) 7.5 0.005522 0.016149
GO:0051082 unfolded protein binding 1.96% (1/51) 7.08 0.007357 0.021351
GO:0140098 catalytic activity, acting on RNA 5.88% (3/51) 2.83 0.008609 0.024799
GO:0034645 cellular macromolecule biosynthetic process 13.73% (7/51) 1.57 0.008735 0.024976
GO:0009768 photosynthesis, light harvesting in photosystem I 1.96% (1/51) 6.76 0.009187 0.025513
GO:0016984 ribulose-bisphosphate carboxylase activity 1.96% (1/51) 6.76 0.009187 0.025513
GO:0015977 carbon fixation 1.96% (1/51) 6.76 0.009187 0.025513
GO:0006164 purine nucleotide biosynthetic process 3.92% (2/51) 3.8 0.009156 0.025988
GO:0009544 chloroplast ATP synthase complex 1.96% (1/51) 6.5 0.011015 0.029942
GO:0009522 photosystem I 1.96% (1/51) 6.5 0.011015 0.029942
GO:0003964 RNA-directed DNA polymerase activity 1.96% (1/51) 6.5 0.011015 0.029942
GO:0110165 cellular anatomical entity 96.08% (49/51) 0.18 0.011143 0.030079
GO:0072522 purine-containing compound biosynthetic process 3.92% (2/51) 3.62 0.011536 0.030923
GO:0009772 photosynthetic electron transport in photosystem II 1.96% (1/51) 6.28 0.012839 0.034179
GO:0009055 electron transfer activity 3.92% (2/51) 3.45 0.014432 0.038157
GO:0048564 photosystem I assembly 1.96% (1/51) 6.08 0.01466 0.038495
GO:0005216 ion channel activity 3.92% (2/51) 3.38 0.015842 0.041318
GO:0005575 cellular_component 98.04% (50/51) 0.14 0.019188 0.049708
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_61 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_80 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_35 0.076 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_53 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_115 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_12 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_81 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_135 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (51) (download table)

InterPro Domains

GO Terms

Family Terms