Coexpression cluster: Cluster_106 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009534 chloroplast thylakoid 41.41% (41/99) 5.76 0.0 0.0
GO:0034357 photosynthetic membrane 49.49% (49/99) 5.38 0.0 0.0
GO:0009536 plastid 79.8% (79/99) 2.53 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 48.48% (48/99) 5.41 0.0 0.0
GO:0042170 plastid membrane 51.52% (51/99) 5.17 0.0 0.0
GO:0009507 chloroplast 79.8% (79/99) 2.56 0.0 0.0
GO:0042651 thylakoid membrane 49.49% (49/99) 5.38 0.0 0.0
GO:0031976 plastid thylakoid 41.41% (41/99) 5.76 0.0 0.0
GO:0055035 plastid thylakoid membrane 48.48% (48/99) 5.4 0.0 0.0
GO:0005622 intracellular anatomical structure 47.47% (47/99) 4.93 0.0 0.0
GO:0009579 thylakoid 47.47% (47/99) 5.33 0.0 0.0
GO:0031090 organelle membrane 52.53% (52/99) 3.78 0.0 0.0
GO:0031984 organelle subcompartment 41.41% (41/99) 4.65 0.0 0.0
GO:0015979 photosynthesis 32.32% (32/99) 5.56 0.0 0.0
GO:0019344 cysteine biosynthetic process 28.28% (28/99) 5.25 0.0 0.0
GO:0006534 cysteine metabolic process 28.28% (28/99) 5.24 0.0 0.0
GO:0009070 serine family amino acid biosynthetic process 28.28% (28/99) 5.23 0.0 0.0
GO:0019684 photosynthesis, light reaction 25.25% (25/99) 5.56 0.0 0.0
GO:0009069 serine family amino acid metabolic process 28.28% (28/99) 4.94 0.0 0.0
GO:0000097 sulfur amino acid biosynthetic process 28.28% (28/99) 4.71 0.0 0.0
GO:1901607 alpha-amino acid biosynthetic process 29.29% (29/99) 4.45 0.0 0.0
GO:0000096 sulfur amino acid metabolic process 28.28% (28/99) 4.56 0.0 0.0
GO:0044272 sulfur compound biosynthetic process 31.31% (31/99) 4.19 0.0 0.0
GO:0006364 rRNA processing 25.25% (25/99) 4.91 0.0 0.0
GO:0016072 rRNA metabolic process 25.25% (25/99) 4.9 0.0 0.0
GO:0008652 cellular amino acid biosynthetic process 29.29% (29/99) 4.3 0.0 0.0
GO:0010287 plastoglobule 18.18% (18/99) 6.21 0.0 0.0
GO:0016168 chlorophyll binding 15.15% (15/99) 7.03 0.0 0.0
GO:0009941 chloroplast envelope 31.31% (31/99) 4.01 0.0 0.0
GO:0009526 plastid envelope 31.31% (31/99) 4.0 0.0 0.0
GO:0030076 light-harvesting complex 14.14% (14/99) 7.29 0.0 0.0
GO:0034470 ncRNA processing 25.25% (25/99) 4.7 0.0 0.0
GO:0046906 tetrapyrrole binding 16.16% (16/99) 6.57 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 31.31% (31/99) 3.85 0.0 0.0
GO:0031967 organelle envelope 31.31% (31/99) 3.85 0.0 0.0
GO:0031975 envelope 31.31% (31/99) 3.85 0.0 0.0
GO:1901605 alpha-amino acid metabolic process 29.29% (29/99) 3.99 0.0 0.0
GO:0034660 ncRNA metabolic process 25.25% (25/99) 4.35 0.0 0.0
GO:0006790 sulfur compound metabolic process 31.31% (31/99) 3.62 0.0 0.0
GO:0009521 photosystem 13.13% (13/99) 6.97 0.0 0.0
GO:0035304 regulation of protein dephosphorylation 19.19% (19/99) 5.25 0.0 0.0
GO:0035303 regulation of dephosphorylation 19.19% (19/99) 5.24 0.0 0.0
GO:0010207 photosystem II assembly 20.2% (20/99) 4.99 0.0 0.0
GO:0032991 protein-containing complex 38.38% (38/99) 2.97 0.0 0.0
GO:0009657 plastid organization 23.23% (23/99) 4.41 0.0 0.0
GO:0098796 membrane protein complex 24.24% (24/99) 4.2 0.0 0.0
GO:0006520 cellular amino acid metabolic process 29.29% (29/99) 3.62 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 31.31% (31/99) 3.25 0.0 0.0
GO:0051174 regulation of phosphorus metabolic process 19.19% (19/99) 4.76 0.0 0.0
GO:0019220 regulation of phosphate metabolic process 19.19% (19/99) 4.76 0.0 0.0
GO:0031399 regulation of protein modification process 19.19% (19/99) 4.72 0.0 0.0
GO:0044237 cellular metabolic process 70.71% (70/99) 1.48 0.0 0.0
GO:0044283 small molecule biosynthetic process 34.34% (34/99) 2.9 0.0 0.0
GO:0016053 organic acid biosynthetic process 31.31% (31/99) 3.12 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 35.35% (35/99) 2.79 0.0 0.0
GO:0098807 chloroplast thylakoid membrane protein complex 11.11% (11/99) 6.63 0.0 0.0
GO:0008152 metabolic process 72.73% (72/99) 1.35 0.0 0.0
GO:0032268 regulation of cellular protein metabolic process 19.19% (19/99) 4.29 0.0 0.0
GO:0051246 regulation of protein metabolic process 19.19% (19/99) 4.25 0.0 0.0
GO:0016020 membrane 56.57% (56/99) 1.74 0.0 0.0
GO:0009538 photosystem I reaction center 8.08% (8/99) 7.67 0.0 0.0
GO:0043436 oxoacid metabolic process 36.36% (36/99) 2.44 0.0 0.0
GO:0006082 organic acid metabolic process 36.36% (36/99) 2.4 0.0 0.0
GO:0006396 RNA processing 25.25% (25/99) 3.16 0.0 0.0
GO:0009523 photosystem II 9.09% (9/99) 6.77 0.0 0.0
GO:0009987 cellular process 77.78% (77/99) 1.09 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 20.2% (20/99) 3.62 0.0 0.0
GO:0065003 protein-containing complex assembly 20.2% (20/99) 3.56 0.0 0.0
GO:0019725 cellular homeostasis 15.15% (15/99) 4.42 0.0 0.0
GO:0043933 protein-containing complex subunit organization 20.2% (20/99) 3.53 0.0 0.0
GO:0019752 carboxylic acid metabolic process 33.33% (33/99) 2.4 0.0 0.0
GO:0030003 cellular cation homeostasis 14.14% (14/99) 4.56 0.0 0.0
GO:0055080 cation homeostasis 15.15% (15/99) 4.32 0.0 0.0
GO:0030095 chloroplast photosystem II 8.08% (8/99) 6.88 0.0 0.0
GO:0044281 small molecule metabolic process 39.39% (39/99) 2.05 0.0 0.0
GO:0006873 cellular ion homeostasis 14.14% (14/99) 4.48 0.0 0.0
GO:0010114 response to red light 12.12% (12/99) 5.01 0.0 0.0
GO:0055082 cellular chemical homeostasis 14.14% (14/99) 4.45 0.0 0.0
GO:0050801 ion homeostasis 15.15% (15/99) 4.19 0.0 0.0
GO:0042592 homeostatic process 16.16% (16/99) 3.94 0.0 0.0
GO:1901576 organic substance biosynthetic process 46.46% (46/99) 1.72 0.0 0.0
GO:0009058 biosynthetic process 46.46% (46/99) 1.68 0.0 0.0
GO:0009637 response to blue light 12.12% (12/99) 4.71 0.0 0.0
GO:0009416 response to light stimulus 26.26% (26/99) 2.64 0.0 0.0
GO:0048878 chemical homeostasis 15.15% (15/99) 3.94 0.0 0.0
GO:0010218 response to far red light 11.11% (11/99) 4.96 0.0 0.0
GO:0022607 cellular component assembly 21.21% (21/99) 3.04 0.0 0.0
GO:0009314 response to radiation 26.26% (26/99) 2.55 0.0 0.0
GO:0044249 cellular biosynthetic process 42.42% (42/99) 1.74 0.0 0.0
GO:0010155 regulation of proton transport 10.1% (10/99) 5.18 0.0 0.0
GO:1904062 regulation of cation transmembrane transport 10.1% (10/99) 5.14 0.0 0.0
GO:0006807 nitrogen compound metabolic process 50.51% (50/99) 1.45 0.0 0.0
GO:0071704 organic substance metabolic process 60.61% (60/99) 1.2 0.0 0.0
GO:0065007 biological regulation 50.51% (50/99) 1.44 0.0 0.0
GO:0016070 RNA metabolic process 26.26% (26/99) 2.39 0.0 0.0
GO:0009543 chloroplast thylakoid lumen 9.09% (9/99) 5.15 0.0 0.0
GO:0031978 plastid thylakoid lumen 9.09% (9/99) 5.15 0.0 0.0
GO:0034765 regulation of ion transmembrane transport 10.1% (10/99) 4.65 0.0 0.0
GO:0034762 regulation of transmembrane transport 10.1% (10/99) 4.57 0.0 0.0
GO:0006996 organelle organization 24.24% (24/99) 2.39 0.0 0.0
GO:0031977 thylakoid lumen 9.09% (9/99) 4.84 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 89.9% (89/99) 0.58 0.0 0.0
GO:0043227 membrane-bounded organelle 89.9% (89/99) 0.58 0.0 0.0
GO:0044238 primary metabolic process 53.54% (53/99) 1.22 0.0 0.0
GO:0043229 intracellular organelle 89.9% (89/99) 0.57 0.0 0.0
GO:0043226 organelle 89.9% (89/99) 0.57 0.0 0.0
GO:0043269 regulation of ion transport 10.1% (10/99) 4.29 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 40.4% (40/99) 1.49 0.0 0.0
GO:0010109 regulation of photosynthesis 6.06% (6/99) 6.01 0.0 0.0
GO:0009642 response to light intensity 12.12% (12/99) 3.57 0.0 0.0
GO:0009644 response to high light intensity 11.11% (11/99) 3.78 0.0 0.0
GO:0009773 photosynthetic electron transport in photosystem I 7.07% (7/99) 5.29 0.0 0.0
GO:0015994 chlorophyll metabolic process 10.1% (10/99) 4.03 0.0 0.0
GO:0050794 regulation of cellular process 39.39% (39/99) 1.47 0.0 0.0
GO:0051049 regulation of transport 10.1% (10/99) 4.0 0.0 0.0
GO:0042440 pigment metabolic process 12.12% (12/99) 3.47 0.0 0.0
GO:0090304 nucleic acid metabolic process 26.26% (26/99) 1.98 0.0 0.0
GO:0046148 pigment biosynthetic process 11.11% (11/99) 3.67 0.0 0.0
GO:0031323 regulation of cellular metabolic process 29.29% (29/99) 1.81 0.0 0.0
GO:0046483 heterocycle metabolic process 32.32% (32/99) 1.68 0.0 0.0
GO:0009639 response to red or far red light 13.13% (13/99) 3.23 0.0 0.0
GO:0042548 regulation of photosynthesis, light reaction 5.05% (5/99) 6.45 0.0 0.0
GO:0009522 photosystem I 4.04% (4/99) 7.54 0.0 0.0
GO:0006778 porphyrin-containing compound metabolic process 10.1% (10/99) 3.8 0.0 0.0
GO:0033013 tetrapyrrole metabolic process 10.1% (10/99) 3.79 0.0 0.0
GO:0009767 photosynthetic electron transport chain 7.07% (7/99) 4.91 0.0 0.0
GO:0043467 regulation of generation of precursor metabolites and energy 5.05% (5/99) 6.28 0.0 0.0
GO:0032879 regulation of localization 10.1% (10/99) 3.71 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 32.32% (32/99) 1.59 0.0 0.0
GO:0015995 chlorophyll biosynthetic process 8.08% (8/99) 4.34 0.0 0.0
GO:0019222 regulation of metabolic process 30.3% (30/99) 1.62 0.0 0.0
GO:0065008 regulation of biological quality 16.16% (16/99) 2.54 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 32.32% (32/99) 1.53 0.0 0.0
GO:0080090 regulation of primary metabolic process 26.26% (26/99) 1.74 0.0 0.0
GO:0006779 porphyrin-containing compound biosynthetic process 8.08% (8/99) 4.05 0.0 0.0
GO:0051171 regulation of nitrogen compound metabolic process 25.25% (25/99) 1.78 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 8.08% (8/99) 4.01 0.0 0.0
GO:0022900 electron transport chain 7.07% (7/99) 4.43 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 27.27% (27/99) 1.65 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 32.32% (32/99) 1.45 0.0 0.0
GO:0050789 regulation of biological process 39.39% (39/99) 1.23 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 4.04% (4/99) 6.43 0.0 1e-06
GO:0009743 response to carbohydrate 10.1% (10/99) 3.23 0.0 1e-06
GO:0009765 photosynthesis, light harvesting 4.04% (4/99) 6.32 0.0 1e-06
GO:0009658 chloroplast organization 9.09% (9/99) 3.43 0.0 1e-06
GO:0016043 cellular component organization 26.26% (26/99) 1.6 0.0 1e-06
GO:0006740 NADPH regeneration 8.08% (8/99) 3.61 0.0 2e-06
GO:0006739 NADP metabolic process 8.08% (8/99) 3.59 0.0 2e-06
GO:0042549 photosystem II stabilization 3.03% (3/99) 7.39 0.0 2e-06
GO:0009768 photosynthesis, light harvesting in photosystem I 3.03% (3/99) 7.39 0.0 2e-06
GO:0009744 response to sucrose 8.08% (8/99) 3.43 1e-06 5e-06
GO:0034285 response to disaccharide 8.08% (8/99) 3.41 1e-06 5e-06
GO:0009628 response to abiotic stimulus 27.27% (27/99) 1.45 1e-06 5e-06
GO:0071840 cellular component organization or biogenesis 26.26% (26/99) 1.47 1e-06 6e-06
GO:0009532 plastid stroma 12.12% (12/99) 2.51 1e-06 7e-06
GO:0009570 chloroplast stroma 12.12% (12/99) 2.51 1e-06 7e-06
GO:0060255 regulation of macromolecule metabolic process 24.24% (24/99) 1.48 3e-06 1.5e-05
GO:0006098 pentose-phosphate shunt 7.07% (7/99) 3.47 3e-06 1.7e-05
GO:0043170 macromolecule metabolic process 35.35% (35/99) 1.11 4e-06 1.8e-05
GO:0043155 negative regulation of photosynthesis, light reaction 3.03% (3/99) 6.54 4e-06 1.9e-05
GO:0010205 photoinhibition 3.03% (3/99) 6.54 4e-06 1.9e-05
GO:0043085 positive regulation of catalytic activity 6.06% (6/99) 3.87 4e-06 1.9e-05
GO:0044093 positive regulation of molecular function 6.06% (6/99) 3.84 4e-06 2e-05
GO:0051156 glucose 6-phosphate metabolic process 7.07% (7/99) 3.43 4e-06 2.1e-05
GO:0050790 regulation of catalytic activity 7.07% (7/99) 3.3 8e-06 3.7e-05
GO:1901135 carbohydrate derivative metabolic process 15.15% (15/99) 1.93 8e-06 4.1e-05
GO:1905156 negative regulation of photosynthesis 3.03% (3/99) 6.13 1e-05 4.6e-05
GO:0010242 oxygen evolving activity 2.02% (2/99) 8.13 1.3e-05 6.1e-05
GO:0009783 photosystem II antenna complex 2.02% (2/99) 8.13 1.3e-05 6.1e-05
GO:0019637 organophosphate metabolic process 15.15% (15/99) 1.88 1.3e-05 6.2e-05
GO:0003727 single-stranded RNA binding 4.04% (4/99) 4.77 1.4e-05 6.7e-05
GO:0065009 regulation of molecular function 7.07% (7/99) 2.99 3e-05 0.000141
GO:0016109 tetraterpenoid biosynthetic process 5.05% (5/99) 3.79 3.2e-05 0.000148
GO:0016117 carotenoid biosynthetic process 5.05% (5/99) 3.79 3.2e-05 0.000148
GO:0009902 chloroplast relocation 5.05% (5/99) 3.76 3.5e-05 0.000161
GO:0051667 establishment of plastid localization 5.05% (5/99) 3.76 3.5e-05 0.000161
GO:0051644 plastid localization 5.05% (5/99) 3.75 3.7e-05 0.000167
GO:0019750 chloroplast localization 5.05% (5/99) 3.75 3.7e-05 0.000167
GO:0030093 chloroplast photosystem I 2.02% (2/99) 7.54 3.8e-05 0.000171
GO:0051656 establishment of organelle localization 5.05% (5/99) 3.72 4e-05 0.000179
GO:0016108 tetraterpenoid metabolic process 5.05% (5/99) 3.72 4e-05 0.000179
GO:0016116 carotenoid metabolic process 5.05% (5/99) 3.72 4e-05 0.000179
GO:0008266 poly(U) RNA binding 3.03% (3/99) 5.46 4.1e-05 0.000181
GO:0008187 poly-pyrimidine tract binding 3.03% (3/99) 5.46 4.1e-05 0.000181
GO:0009965 leaf morphogenesis 6.06% (6/99) 3.16 6e-05 0.000263
GO:0031408 oxylipin biosynthetic process 3.03% (3/99) 5.25 6.5e-05 0.000283
GO:0006796 phosphate-containing compound metabolic process 17.17% (17/99) 1.52 7.5e-05 0.000324
GO:0031407 oxylipin metabolic process 3.03% (3/99) 5.13 8.5e-05 0.000364
GO:0009735 response to cytokinin 6.06% (6/99) 3.07 8.5e-05 0.000365
GO:0006793 phosphorus metabolic process 17.17% (17/99) 1.5 8.8e-05 0.000374
GO:0033559 unsaturated fatty acid metabolic process 4.04% (4/99) 4.0 0.000118 0.000496
GO:0006636 unsaturated fatty acid biosynthetic process 4.04% (4/99) 4.0 0.000118 0.000496
GO:0031969 chloroplast membrane 4.04% (4/99) 3.86 0.000171 0.000715
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 6.06% (6/99) 2.88 0.000174 0.000719
GO:0019682 glyceraldehyde-3-phosphate metabolic process 6.06% (6/99) 2.88 0.000174 0.000719
GO:0015120 phosphoglycerate transmembrane transporter activity 2.02% (2/99) 6.54 0.000189 0.000764
GO:0042879 aldonate transmembrane transporter activity 2.02% (2/99) 6.54 0.000189 0.000764
GO:0042873 aldonate transmembrane transport 2.02% (2/99) 6.54 0.000189 0.000764
GO:0015713 phosphoglycerate transmembrane transport 2.02% (2/99) 6.54 0.000189 0.000764
GO:0046490 isopentenyl diphosphate metabolic process 6.06% (6/99) 2.85 0.000191 0.000766
GO:0009240 isopentenyl diphosphate biosynthetic process 6.06% (6/99) 2.85 0.000191 0.000766
GO:1901363 heterocyclic compound binding 23.23% (23/99) 1.14 0.000212 0.00084
GO:0018130 heterocycle biosynthetic process 12.12% (12/99) 1.77 0.000211 0.000842
GO:0097159 organic cyclic compound binding 23.23% (23/99) 1.13 0.000233 0.000919
GO:0016491 oxidoreductase activity 12.12% (12/99) 1.74 0.000244 0.000961
GO:0010196 nonphotochemical quenching 2.02% (2/99) 6.32 0.000263 0.001025
GO:1990066 energy quenching 2.02% (2/99) 6.32 0.000263 0.001025
GO:0009533 chloroplast stromal thylakoid 2.02% (2/99) 6.13 0.00035 0.001357
GO:0051640 organelle localization 5.05% (5/99) 2.99 0.000435 0.001678
GO:0019438 aromatic compound biosynthetic process 13.13% (13/99) 1.55 0.000478 0.001836
GO:0009706 chloroplast inner membrane 3.03% (3/99) 4.25 0.00053 0.002024
GO:0030091 protein repair 2.02% (2/99) 5.8 0.00056 0.00212
GO:0010206 photosystem II repair 2.02% (2/99) 5.8 0.00056 0.00212
GO:0019216 regulation of lipid metabolic process 3.03% (3/99) 4.19 0.000604 0.002275
GO:0009528 plastid inner membrane 3.03% (3/99) 4.16 0.000644 0.002413
GO:1905392 plant organ morphogenesis 6.06% (6/99) 2.45 0.000841 0.003139
GO:0008150 biological_process 87.88% (87/99) 0.24 0.000866 0.003217
GO:0015718 monocarboxylic acid transport 2.02% (2/99) 5.43 0.000964 0.003566
GO:1990204 oxidoreductase complex 4.04% (4/99) 3.14 0.00114 0.004196
GO:0006081 cellular aldehyde metabolic process 6.06% (6/99) 2.36 0.001146 0.004198
GO:0051254 positive regulation of RNA metabolic process 7.07% (7/99) 2.12 0.001202 0.004323
GO:0045893 positive regulation of transcription, DNA-templated 7.07% (7/99) 2.12 0.001202 0.004323
GO:1903508 positive regulation of nucleic acid-templated transcription 7.07% (7/99) 2.12 0.001202 0.004323
GO:1902680 positive regulation of RNA biosynthetic process 7.07% (7/99) 2.12 0.001202 0.004323
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 7.07% (7/99) 2.1 0.00128 0.004585
GO:0090407 organophosphate biosynthetic process 9.09% (9/99) 1.77 0.001311 0.004674
GO:0044271 cellular nitrogen compound biosynthetic process 12.12% (12/99) 1.45 0.00147 0.00522
GO:0032958 inositol phosphate biosynthetic process 3.03% (3/99) 3.69 0.001655 0.005774
GO:0033517 myo-inositol hexakisphosphate metabolic process 3.03% (3/99) 3.69 0.001655 0.005774
GO:0010264 myo-inositol hexakisphosphate biosynthetic process 3.03% (3/99) 3.69 0.001655 0.005774
GO:0010557 positive regulation of macromolecule biosynthetic process 7.07% (7/99) 2.04 0.001654 0.005848
GO:0031328 positive regulation of cellular biosynthetic process 7.07% (7/99) 2.01 0.001797 0.006241
GO:0051173 positive regulation of nitrogen compound metabolic process 7.07% (7/99) 2.01 0.001818 0.006288
GO:0046173 polyol biosynthetic process 3.03% (3/99) 3.62 0.001884 0.006489
GO:0006633 fatty acid biosynthetic process 4.04% (4/99) 2.94 0.001903 0.006527
GO:0046777 protein autophosphorylation 4.04% (4/99) 2.93 0.001951 0.006663
GO:0010604 positive regulation of macromolecule metabolic process 7.07% (7/99) 1.98 0.002086 0.007093
GO:0042793 plastid transcription 3.03% (3/99) 3.56 0.002132 0.00722
GO:0031325 positive regulation of cellular metabolic process 7.07% (7/99) 1.96 0.002231 0.007522
GO:0071478 cellular response to radiation 3.03% (3/99) 3.5 0.002399 0.007992
GO:0071482 cellular response to light stimulus 3.03% (3/99) 3.5 0.002399 0.007992
GO:0016114 terpenoid biosynthetic process 5.05% (5/99) 2.44 0.002384 0.008007
GO:0050896 response to stimulus 33.33% (33/99) 0.68 0.002434 0.008041
GO:1901362 organic cyclic compound biosynthetic process 13.13% (13/99) 1.29 0.002434 0.008072
GO:0104004 cellular response to environmental stimulus 4.04% (4/99) 2.82 0.002534 0.008304
GO:0071214 cellular response to abiotic stimulus 4.04% (4/99) 2.82 0.002534 0.008304
GO:0008654 phospholipid biosynthetic process 6.06% (6/99) 2.11 0.002715 0.008859
GO:0005488 binding 33.33% (33/99) 0.66 0.003139 0.010203
GO:0016144 S-glycoside biosynthetic process 4.04% (4/99) 2.73 0.003228 0.010366
GO:0019758 glycosinolate biosynthetic process 4.04% (4/99) 2.73 0.003228 0.010366
GO:0019761 glucosinolate biosynthetic process 4.04% (4/99) 2.73 0.003228 0.010366
GO:1901659 glycosyl compound biosynthetic process 4.04% (4/99) 2.68 0.003582 0.010654
GO:0010277 chlorophyllide a oxygenase [overall] activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 1.01% (1/99) 8.13 0.00358 0.010686
GO:0046677 response to antibiotic 1.01% (1/99) 8.13 0.00358 0.010686
GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:1901917 regulation of exoribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0032069 regulation of nuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:1905778 negative regulation of exonuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0045550 geranylgeranyl reductase activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:1905777 regulation of exonuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0060701 negative regulation of ribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0009780 photosynthetic NADP+ reduction 1.01% (1/99) 8.13 0.00358 0.010686
GO:0032074 negative regulation of nuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:1901918 negative regulation of exoribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0060700 regulation of ribonuclease activity 1.01% (1/99) 8.13 0.00358 0.010686
GO:0098656 anion transmembrane transport 2.02% (2/99) 4.48 0.003607 0.010688
GO:0006644 phospholipid metabolic process 6.06% (6/99) 2.04 0.003518 0.011253
GO:0006090 pyruvate metabolic process 6.06% (6/99) 2.01 0.003822 0.011284
GO:0006721 terpenoid metabolic process 5.05% (5/99) 2.3 0.003543 0.011287
GO:0015605 organophosphate ester transmembrane transporter activity 2.02% (2/99) 4.43 0.003898 0.011468
GO:0043647 inositol phosphate metabolic process 3.03% (3/99) 3.25 0.003918 0.011483
GO:0072330 monocarboxylic acid biosynthetic process 7.07% (7/99) 1.8 0.004148 0.012115
GO:0008299 isoprenoid biosynthetic process 5.05% (5/99) 2.24 0.004223 0.012288
GO:0009073 aromatic amino acid family biosynthetic process 3.03% (3/99) 3.16 0.004713 0.013663
GO:0009891 positive regulation of biosynthetic process 7.07% (7/99) 1.74 0.005146 0.014868
GO:0009668 plastid membrane organization 4.04% (4/99) 2.5 0.005553 0.015929
GO:0010027 thylakoid membrane organization 4.04% (4/99) 2.5 0.005553 0.015929
GO:0006720 isoprenoid metabolic process 5.05% (5/99) 2.13 0.005932 0.016954
GO:0016143 S-glycoside metabolic process 4.04% (4/99) 2.47 0.006061 0.017142
GO:0019760 glucosinolate metabolic process 4.04% (4/99) 2.47 0.006061 0.017142
GO:0019757 glycosinolate metabolic process 4.04% (4/99) 2.47 0.006061 0.017142
GO:0009893 positive regulation of metabolic process 7.07% (7/99) 1.67 0.006651 0.018744
GO:0080085 signal recognition particle, chloroplast targeting 1.01% (1/99) 7.13 0.007147 0.019461
GO:0071461 cellular response to redox state 1.01% (1/99) 7.13 0.007147 0.019461
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 1.01% (1/99) 7.13 0.007147 0.019461
GO:0071277 cellular response to calcium ion 1.01% (1/99) 7.13 0.007147 0.019461
GO:0089721 phosphoenolpyruvate transmembrane transporter activity 1.01% (1/99) 7.13 0.007147 0.019461
GO:0015315 organophosphate:inorganic phosphate antiporter activity 1.01% (1/99) 7.13 0.007147 0.019461
GO:0009782 photosystem I antenna complex 1.01% (1/99) 7.13 0.007147 0.019461
GO:0015121 phosphoenolpyruvate:phosphate antiporter activity 1.01% (1/99) 7.13 0.007147 0.019461
GO:0010270 photosystem II oxygen evolving complex assembly 1.01% (1/99) 7.13 0.007147 0.019461
GO:0061024 membrane organization 4.04% (4/99) 2.41 0.006937 0.01948
GO:0019751 polyol metabolic process 3.03% (3/99) 2.9 0.007651 0.020763
GO:0042221 response to chemical 20.2% (20/99) 0.82 0.00781 0.021123
GO:0005982 starch metabolic process 4.04% (4/99) 2.31 0.00893 0.024072
GO:0046165 alcohol biosynthetic process 3.03% (3/99) 2.8 0.009236 0.024815
GO:1901657 glycosyl compound metabolic process 4.04% (4/99) 2.26 0.010053 0.026921
GO:0004096 catalase activity 1.01% (1/99) 6.54 0.010701 0.027209
GO:0009503 thylakoid light-harvesting complex 1.01% (1/99) 6.54 0.010701 0.027209
GO:0080045 quercetin 3'-O-glucosyltransferase activity 1.01% (1/99) 6.54 0.010701 0.027209
GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor 1.01% (1/99) 6.54 0.010701 0.027209
GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity 1.01% (1/99) 6.54 0.010701 0.027209
GO:0009517 PSII associated light-harvesting complex II 1.01% (1/99) 6.54 0.010701 0.027209
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 1.01% (1/99) 6.54 0.010701 0.027209
GO:0050347 trans-octaprenyltranstransferase activity 1.01% (1/99) 6.54 0.010701 0.027209
GO:0042550 photosystem I stabilization 1.01% (1/99) 6.54 0.010701 0.027209
GO:0016851 magnesium chelatase activity 1.01% (1/99) 6.54 0.010701 0.027209
GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes 1.01% (1/99) 6.54 0.010701 0.027209
GO:0080005 photosystem stoichiometry adjustment 1.01% (1/99) 6.54 0.010701 0.027209
GO:0008883 glutamyl-tRNA reductase activity 1.01% (1/99) 6.54 0.010701 0.027209
GO:0031304 intrinsic component of mitochondrial inner membrane 1.01% (1/99) 6.54 0.010701 0.027209
GO:0051002 ligase activity, forming nitrogen-metal bonds 1.01% (1/99) 6.54 0.010701 0.027209
GO:1901700 response to oxygen-containing compound 14.14% (14/99) 0.98 0.010924 0.027687
GO:0015297 antiporter activity 3.03% (3/99) 2.73 0.010542 0.028135
GO:0019866 organelle inner membrane 3.03% (3/99) 2.7 0.011233 0.028381
GO:0110165 cellular anatomical entity 92.93% (92/99) 0.13 0.011324 0.028433
GO:0010033 response to organic substance 15.15% (15/99) 0.93 0.011296 0.028452
GO:0030154 cell differentiation 6.06% (6/99) 1.68 0.011457 0.028679
GO:0048522 positive regulation of cellular process 7.07% (7/99) 1.49 0.012405 0.030954
GO:0010007 magnesium chelatase complex 1.01% (1/99) 6.13 0.014243 0.034788
GO:0015714 phosphoenolpyruvate transport 1.01% (1/99) 6.13 0.014243 0.034788
GO:0015717 triose phosphate transport 1.01% (1/99) 6.13 0.014243 0.034788
GO:0035436 triose phosphate transmembrane transport 1.01% (1/99) 6.13 0.014243 0.034788
GO:0042389 omega-3 fatty acid desaturase activity 1.01% (1/99) 6.13 0.014243 0.034788
GO:0071917 triose-phosphate transmembrane transporter activity 1.01% (1/99) 6.13 0.014243 0.034788
GO:0051775 response to redox state 1.01% (1/99) 6.13 0.014243 0.034788
GO:0015748 organophosphate ester transport 2.02% (2/99) 3.45 0.014432 0.035144
GO:0008610 lipid biosynthetic process 9.09% (9/99) 1.23 0.014566 0.035363
GO:0031324 negative regulation of cellular metabolic process 4.04% (4/99) 2.05 0.016035 0.038812
GO:0000023 maltose metabolic process 3.03% (3/99) 2.46 0.01739 0.041965
GO:0009653 anatomical structure morphogenesis 9.09% (9/99) 1.16 0.019523 0.046971
GO:0050821 protein stabilization 1.01% (1/99) 5.54 0.021289 0.049737
GO:0010236 plastoquinone biosynthetic process 1.01% (1/99) 5.54 0.021289 0.049737
GO:0009904 chloroplast accumulation movement 1.01% (1/99) 5.54 0.021289 0.049737
GO:0009769 photosynthesis, light harvesting in photosystem II 1.01% (1/99) 5.54 0.021289 0.049737
GO:0045038 protein import into chloroplast thylakoid membrane 1.01% (1/99) 5.54 0.021289 0.049737
GO:0031647 regulation of protein stability 1.01% (1/99) 5.54 0.021289 0.049737
GO:0016987 sigma factor activity 1.01% (1/99) 5.54 0.021289 0.049737
GO:0009643 photosynthetic acclimation 1.01% (1/99) 5.54 0.021289 0.049737
GO:0016123 xanthophyll biosynthetic process 1.01% (1/99) 5.54 0.021289 0.049737
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_20 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_48 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_98 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_141 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_175 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_211 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_225 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_4 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_27 0.152 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_40 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_65 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_103 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_122 0.048 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_7 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_11 0.214 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_14 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_61 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_74 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_1 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_24 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_51 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_54 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_63 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_68 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_69 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_103 0.176 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_120 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_171 0.214 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_177 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_193 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_231 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_256 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_38 0.147 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_109 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_123 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_126 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (99) (download table)

InterPro Domains

GO Terms

Family Terms