Coexpression cluster: Cluster_70 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0045492 xylan biosynthetic process 44.62% (29/65) 6.08 0.0 0.0
GO:0045491 xylan metabolic process 44.62% (29/65) 6.05 0.0 0.0
GO:0010413 glucuronoxylan metabolic process 44.62% (29/65) 6.08 0.0 0.0
GO:0070589 cellular component macromolecule biosynthetic process 44.62% (29/65) 5.95 0.0 0.0
GO:0070592 cell wall polysaccharide biosynthetic process 44.62% (29/65) 5.95 0.0 0.0
GO:0044038 cell wall macromolecule biosynthetic process 44.62% (29/65) 5.95 0.0 0.0
GO:0010410 hemicellulose metabolic process 44.62% (29/65) 5.94 0.0 0.0
GO:0010383 cell wall polysaccharide metabolic process 44.62% (29/65) 5.7 0.0 0.0
GO:0044036 cell wall macromolecule metabolic process 44.62% (29/65) 5.32 0.0 0.0
GO:0033692 cellular polysaccharide biosynthetic process 44.62% (29/65) 4.7 0.0 0.0
GO:0009832 plant-type cell wall biogenesis 32.31% (21/65) 6.07 0.0 0.0
GO:0034637 cellular carbohydrate biosynthetic process 44.62% (29/65) 4.6 0.0 0.0
GO:0000271 polysaccharide biosynthetic process 44.62% (29/65) 4.45 0.0 0.0
GO:0044264 cellular polysaccharide metabolic process 44.62% (29/65) 4.45 0.0 0.0
GO:0042546 cell wall biogenesis 32.31% (21/65) 5.63 0.0 0.0
GO:0044262 cellular carbohydrate metabolic process 44.62% (29/65) 4.26 0.0 0.0
GO:0005976 polysaccharide metabolic process 44.62% (29/65) 4.23 0.0 0.0
GO:0009834 plant-type secondary cell wall biogenesis 21.54% (14/65) 7.29 0.0 0.0
GO:0016051 carbohydrate biosynthetic process 44.62% (29/65) 3.9 0.0 0.0
GO:0044085 cellular component biogenesis 32.31% (21/65) 4.92 0.0 0.0
GO:0071669 plant-type cell wall organization or biogenesis 32.31% (21/65) 4.41 0.0 0.0
GO:0005975 carbohydrate metabolic process 44.62% (29/65) 3.28 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 44.62% (29/65) 3.27 0.0 0.0
GO:0009059 macromolecule biosynthetic process 44.62% (29/65) 3.08 0.0 0.0
GO:0071554 cell wall organization or biogenesis 33.85% (22/65) 3.89 0.0 0.0
GO:0044249 cellular biosynthetic process 47.69% (31/65) 1.91 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 46.15% (30/65) 1.89 0.0 0.0
GO:0009058 biosynthetic process 47.69% (31/65) 1.71 0.0 0.0
GO:2000652 regulation of secondary cell wall biogenesis 7.69% (5/65) 7.05 0.0 0.0
GO:1903338 regulation of cell wall organization or biogenesis 7.69% (5/65) 6.97 0.0 0.0
GO:1901576 organic substance biosynthetic process 46.15% (30/65) 1.71 0.0 0.0
GO:0071840 cellular component organization or biogenesis 35.38% (23/65) 1.9 0.0 0.0
GO:0044087 regulation of cellular component biogenesis 7.69% (5/65) 6.01 0.0 0.0
GO:0010417 glucuronoxylan biosynthetic process 6.15% (4/65) 7.15 0.0 0.0
GO:0043170 macromolecule metabolic process 46.15% (30/65) 1.49 0.0 0.0
GO:0009809 lignin biosynthetic process 7.69% (5/65) 5.44 0.0 1e-06
GO:0009808 lignin metabolic process 7.69% (5/65) 5.15 0.0 3e-06
GO:0010089 xylem development 7.69% (5/65) 4.66 2e-06 1.8e-05
GO:0031328 positive regulation of cellular biosynthetic process 13.85% (9/65) 2.98 2e-06 2e-05
GO:0031325 positive regulation of cellular metabolic process 13.85% (9/65) 2.93 3e-06 2.7e-05
GO:0016758 hexosyltransferase activity 10.77% (7/65) 3.42 4e-06 4.2e-05
GO:0010087 phloem or xylem histogenesis 7.69% (5/65) 4.31 5e-06 5.3e-05
GO:0009891 positive regulation of biosynthetic process 13.85% (9/65) 2.71 9e-06 8.6e-05
GO:0045893 positive regulation of transcription, DNA-templated 12.31% (8/65) 2.92 1.1e-05 9.2e-05
GO:1903508 positive regulation of nucleic acid-templated transcription 12.31% (8/65) 2.92 1.1e-05 9.2e-05
GO:1902680 positive regulation of RNA biosynthetic process 12.31% (8/65) 2.92 1.1e-05 9.2e-05
GO:0051254 positive regulation of RNA metabolic process 12.31% (8/65) 2.92 1.1e-05 9.2e-05
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 12.31% (8/65) 2.9 1.1e-05 9.8e-05
GO:0009893 positive regulation of metabolic process 13.85% (9/65) 2.64 1.3e-05 0.000111
GO:0010557 positive regulation of macromolecule biosynthetic process 12.31% (8/65) 2.84 1.6e-05 0.00013
GO:0009699 phenylpropanoid biosynthetic process 7.69% (5/65) 3.98 1.7e-05 0.000136
GO:0051173 positive regulation of nitrogen compound metabolic process 12.31% (8/65) 2.81 1.8e-05 0.000141
GO:0009900 dehiscence 4.62% (3/65) 5.79 2.1e-05 0.000162
GO:0010604 positive regulation of macromolecule metabolic process 12.31% (8/65) 2.78 2.1e-05 0.000164
GO:0044238 primary metabolic process 46.15% (30/65) 1.01 3.1e-05 0.000234
GO:0080116 glucuronoxylan glucuronosyltransferase activity 3.08% (2/65) 7.73 3.3e-05 0.000239
GO:0048522 positive regulation of cellular process 13.85% (9/65) 2.46 3.4e-05 0.000247
GO:0031176 endo-1,4-beta-xylanase activity 3.08% (2/65) 7.41 5.4e-05 0.000385
GO:0009698 phenylpropanoid metabolic process 7.69% (5/65) 3.6 5.8e-05 0.000407
GO:0044237 cellular metabolic process 47.69% (31/65) 0.91 8e-05 0.000547
GO:0016759 cellulose synthase activity 4.62% (3/65) 5.11 9.1e-05 0.000614
GO:0071704 organic substance metabolic process 47.69% (31/65) 0.85 0.000181 0.0012
GO:0048518 positive regulation of biological process 13.85% (9/65) 2.11 0.000217 0.001418
GO:0010047 fruit dehiscence 3.08% (2/65) 6.41 0.000242 0.001557
GO:0009888 tissue development 7.69% (5/65) 3.13 0.00027 0.001687
GO:0016757 glycosyltransferase activity 10.77% (7/65) 2.47 0.000269 0.001707
GO:0097599 xylanase activity 3.08% (2/65) 6.27 0.000295 0.001815
GO:0015020 glucuronosyltransferase activity 3.08% (2/65) 5.93 0.000486 0.002945
GO:0031326 regulation of cellular biosynthetic process 20.0% (13/65) 1.48 0.000636 0.003798
GO:0009901 anther dehiscence 3.08% (2/65) 5.65 0.000723 0.004256
GO:0030244 cellulose biosynthetic process 4.62% (3/65) 4.03 0.000831 0.004391
GO:0050665 hydrogen peroxide biosynthetic process 4.62% (3/65) 4.05 0.000801 0.004398
GO:1903409 reactive oxygen species biosynthetic process 4.62% (3/65) 4.05 0.000801 0.004398
GO:0044550 secondary metabolite biosynthetic process 7.69% (5/65) 2.78 0.000817 0.004428
GO:0008152 metabolic process 47.69% (31/65) 0.74 0.000828 0.004429
GO:0016926 protein desumoylation 4.62% (3/65) 4.01 0.000863 0.004443
GO:0051252 regulation of RNA metabolic process 18.46% (12/65) 1.51 0.000854 0.004453
GO:2001141 regulation of RNA biosynthetic process 18.46% (12/65) 1.52 0.000793 0.004476
GO:1903506 regulation of nucleic acid-templated transcription 18.46% (12/65) 1.52 0.000789 0.004516
GO:0006355 regulation of transcription, DNA-templated 18.46% (12/65) 1.52 0.000789 0.004516
GO:0048856 anatomical structure development 18.46% (12/65) 1.49 0.000954 0.004854
GO:0009889 regulation of biosynthetic process 20.0% (13/65) 1.4 0.00104 0.005227
GO:0019219 regulation of nucleobase-containing compound metabolic process 18.46% (12/65) 1.47 0.001116 0.005539
GO:0051274 beta-glucan biosynthetic process 4.62% (3/65) 3.83 0.001258 0.006171
GO:0008194 UDP-glycosyltransferase activity 6.15% (4/65) 3.08 0.001297 0.006286
GO:0080090 regulation of primary metabolic process 20.0% (13/65) 1.35 0.001452 0.006876
GO:0009987 cellular process 55.38% (36/65) 0.6 0.001445 0.006924
GO:0010468 regulation of gene expression 20.0% (13/65) 1.34 0.001539 0.007203
GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity 3.08% (2/65) 5.09 0.001576 0.007295
GO:0003700 DNA-binding transcription factor activity 16.92% (11/65) 1.49 0.00165 0.007554
GO:0010556 regulation of macromolecule biosynthetic process 18.46% (12/65) 1.4 0.001706 0.007559
GO:0010051 xylem and phloem pattern formation 4.62% (3/65) 3.67 0.001703 0.007627
GO:2000112 regulation of cellular macromolecule biosynthetic process 18.46% (12/65) 1.4 0.001699 0.007692
GO:0140110 transcription regulator activity 16.92% (11/65) 1.47 0.001857 0.008051
GO:0043455 regulation of secondary metabolic process 3.08% (2/65) 4.98 0.001838 0.008057
GO:0010395 rhamnogalacturonan I metabolic process 1.54% (1/65) 8.73 0.00235 0.009781
GO:0010400 rhamnogalacturonan I side chain metabolic process 1.54% (1/65) 8.73 0.00235 0.009781
GO:1901428 regulation of syringal lignin biosynthetic process 1.54% (1/65) 8.73 0.00235 0.009781
GO:1901430 positive regulation of syringal lignin biosynthetic process 1.54% (1/65) 8.73 0.00235 0.009781
GO:0031323 regulation of cellular metabolic process 20.0% (13/65) 1.26 0.002475 0.010198
GO:0051171 regulation of nitrogen compound metabolic process 18.46% (12/65) 1.33 0.002536 0.010343
GO:0030243 cellulose metabolic process 4.62% (3/65) 3.36 0.003138 0.012677
GO:0060255 regulation of macromolecule metabolic process 20.0% (13/65) 1.21 0.003453 0.013813
GO:0070646 protein modification by small protein removal 4.62% (3/65) 3.25 0.003902 0.015312
GO:0019222 regulation of metabolic process 21.54% (14/65) 1.13 0.003895 0.015428
GO:0051273 beta-glucan metabolic process 4.62% (3/65) 3.23 0.004067 0.015809
GO:0046527 glucosyltransferase activity 4.62% (3/65) 3.21 0.004237 0.016314
GO:1902932 positive regulation of alcohol biosynthetic process 1.54% (1/65) 7.73 0.004695 0.017428
GO:0045828 positive regulation of isoprenoid metabolic process 1.54% (1/65) 7.73 0.004695 0.017428
GO:1900378 positive regulation of secondary metabolite biosynthetic process 1.54% (1/65) 7.73 0.004695 0.017428
GO:0010116 positive regulation of abscisic acid biosynthetic process 1.54% (1/65) 7.73 0.004695 0.017428
GO:0042743 hydrogen peroxide metabolic process 4.62% (3/65) 3.1 0.005245 0.019293
GO:1901141 regulation of lignin biosynthetic process 1.54% (1/65) 7.15 0.007035 0.025424
GO:0030775 glucuronoxylan 4-O-methyltransferase activity 1.54% (1/65) 7.15 0.007035 0.025424
GO:0072593 reactive oxygen species metabolic process 4.62% (3/65) 2.92 0.007421 0.026586
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 6.15% (4/65) 2.27 0.009498 0.033733
GO:0003002 regionalization 4.62% (3/65) 2.77 0.009775 0.034421
GO:0005576 extracellular region 20.0% (13/65) 0.99 0.011706 0.03986
GO:0006073 cellular glucan metabolic process 6.15% (4/65) 2.19 0.011558 0.040016
GO:0044042 glucan metabolic process 6.15% (4/65) 2.19 0.011558 0.040016
GO:0010115 regulation of abscisic acid biosynthetic process 1.54% (1/65) 6.41 0.011698 0.040162
GO:0062013 positive regulation of small molecule metabolic process 1.54% (1/65) 6.15 0.014021 0.04735
GO:0019748 secondary metabolic process 7.69% (5/65) 1.79 0.014882 0.04985
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_5 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_7 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_12 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_13 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_18 0.042 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_27 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_30 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_36 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_37 0.059 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_47 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_50 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_51 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_54 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_55 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_58 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_64 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_67 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_72 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_73 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_74 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_78 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_85 0.041 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_93 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_95 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_100 0.042 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_108 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_112 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_115 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_116 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_124 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_126 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_129 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_138 0.047 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_140 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_150 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_154 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_167 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_170 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_171 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_174 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_180 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_184 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_188 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_202 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_206 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_212 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_223 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_235 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_245 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_250 0.033 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_254 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_260 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_263 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_324 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_54 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_73 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_129 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_25 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_39 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_52 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_86 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_138 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_147 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_234 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_299 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_69 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_119 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (65) (download table)

InterPro Domains

GO Terms

Family Terms