Coexpression cluster: Cluster_7 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 7.66% (18/235) 3.21 0.0 0.0
GO:0016070 RNA metabolic process 8.09% (19/235) 2.77 0.0 0.0
GO:0008173 RNA methyltransferase activity 2.98% (7/235) 4.72 0.0 0.0
GO:0090304 nucleic acid metabolic process 8.09% (19/235) 2.26 0.0 1e-06
GO:0009982 pseudouridine synthase activity 2.55% (6/235) 4.74 0.0 3e-06
GO:0006396 RNA processing 4.68% (11/235) 3.08 0.0 3e-06
GO:0008168 methyltransferase activity 4.68% (11/235) 2.98 0.0 5e-06
GO:0001522 pseudouridine synthesis 2.55% (6/235) 4.5 0.0 5e-06
GO:0016866 intramolecular transferase activity 2.55% (6/235) 4.36 0.0 8e-06
GO:0016741 transferase activity, transferring one-carbon groups 4.68% (11/235) 2.88 0.0 9e-06
GO:0009451 RNA modification 2.98% (7/235) 3.88 0.0 9e-06
GO:0003676 nucleic acid binding 10.64% (25/235) 1.58 1e-06 2.3e-05
GO:0140098 catalytic activity, acting on RNA 4.26% (10/235) 2.82 2e-06 3.1e-05
GO:0140640 catalytic activity, acting on a nucleic acid 4.68% (11/235) 2.39 8e-06 0.000154
GO:0006139 nucleobase-containing compound metabolic process 8.51% (20/235) 1.62 9e-06 0.000155
GO:1901360 organic cyclic compound metabolic process 8.94% (21/235) 1.53 1.4e-05 0.000217
GO:0006725 cellular aromatic compound metabolic process 8.51% (20/235) 1.5 2.9e-05 0.000433
GO:0046483 heterocycle metabolic process 8.51% (20/235) 1.5 3.1e-05 0.000443
GO:0005488 binding 25.11% (59/235) 0.7 8.2e-05 0.00109
GO:0034641 cellular nitrogen compound metabolic process 8.51% (20/235) 1.2 0.000488 0.005905
GO:0016853 isomerase activity 2.55% (6/235) 2.59 0.000476 0.006046
GO:1901363 heterocyclic compound binding 16.17% (38/235) 0.79 0.000589 0.006502
GO:0097159 organic cyclic compound binding 16.17% (38/235) 0.79 0.000589 0.006502
GO:0008312 7S RNA binding 0.85% (2/235) 4.92 0.001702 0.01729
GO:0048500 signal recognition particle 0.85% (2/235) 4.92 0.001702 0.01729
GO:0070972 protein localization to endoplasmic reticulum 0.85% (2/235) 4.43 0.003512 0.026234
GO:0045047 protein targeting to ER 0.85% (2/235) 4.43 0.003512 0.026234
GO:0090150 establishment of protein localization to membrane 0.85% (2/235) 4.43 0.003512 0.026234
GO:0072657 protein localization to membrane 0.85% (2/235) 4.43 0.003512 0.026234
GO:0006612 protein targeting to membrane 0.85% (2/235) 4.43 0.003512 0.026234
GO:0072599 establishment of protein localization to endoplasmic reticulum 0.85% (2/235) 4.43 0.003512 0.026234
GO:0051668 localization within membrane 0.85% (2/235) 4.43 0.003512 0.026234
GO:0006613 cotranslational protein targeting to membrane 0.85% (2/235) 4.43 0.003512 0.026234
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 0.85% (2/235) 4.43 0.003512 0.026234
GO:0034470 ncRNA processing 1.7% (4/235) 2.59 0.004289 0.030261
GO:0034660 ncRNA metabolic process 2.13% (5/235) 2.24 0.004196 0.030451
GO:0003674 molecular_function 35.32% (83/235) 0.37 0.004446 0.030524
GO:0006605 protein targeting 0.85% (2/235) 4.24 0.004641 0.031024
GO:0005515 protein binding 8.09% (19/235) 0.95 0.004957 0.031478
GO:0140101 catalytic activity, acting on a tRNA 1.7% (4/235) 2.54 0.004939 0.032169
GO:0072594 establishment of protein localization to organelle 0.85% (2/235) 3.92 0.00733 0.041376
GO:0034613 cellular protein localization 0.85% (2/235) 3.92 0.00733 0.041376
GO:0070727 cellular macromolecule localization 0.85% (2/235) 3.92 0.00733 0.041376
GO:0033365 protein localization to organelle 0.85% (2/235) 3.92 0.00733 0.041376
GO:0008033 tRNA processing 1.28% (3/235) 2.92 0.007156 0.044331
GO:0006399 tRNA metabolic process 1.7% (4/235) 2.33 0.008197 0.04526
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_24 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_39 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_12 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_16 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_71 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_80 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_96 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_135 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_99 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_258 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_292 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_15 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_72 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_74 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_90 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_110 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_136 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (235) (download table)

InterPro Domains

GO Terms

Family Terms