Coexpression cluster: Cluster_120 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 20.41% (10/49) 4.11 0.0 0.0
GO:0090304 nucleic acid metabolic process 20.41% (10/49) 3.6 0.0 0.0
GO:0006364 rRNA processing 8.16% (4/49) 6.25 0.0 7e-06
GO:0016072 rRNA metabolic process 8.16% (4/49) 6.25 0.0 7e-06
GO:0034470 ncRNA processing 10.2% (5/49) 5.18 0.0 7e-06
GO:0006139 nucleobase-containing compound metabolic process 20.41% (10/49) 2.88 1e-06 1.7e-05
GO:0046483 heterocycle metabolic process 20.41% (10/49) 2.76 2e-06 2.8e-05
GO:0006725 cellular aromatic compound metabolic process 20.41% (10/49) 2.77 2e-06 3e-05
GO:1901360 organic cyclic compound metabolic process 20.41% (10/49) 2.72 2e-06 3.1e-05
GO:0009451 RNA modification 8.16% (4/49) 5.33 3e-06 3.5e-05
GO:0034660 ncRNA metabolic process 10.2% (5/49) 4.5 3e-06 3.6e-05
GO:0006396 RNA processing 10.2% (5/49) 4.21 7e-06 7.6e-05
GO:0003676 nucleic acid binding 20.41% (10/49) 2.52 7e-06 8e-05
GO:0008168 methyltransferase activity 10.2% (5/49) 4.11 1e-05 9.3e-05
GO:0034641 cellular nitrogen compound metabolic process 20.41% (10/49) 2.46 1e-05 9.8e-05
GO:0016741 transferase activity, transferring one-carbon groups 10.2% (5/49) 4.0 1.5e-05 0.000124
GO:0001522 pseudouridine synthesis 6.12% (3/49) 5.76 2.2e-05 0.000175
GO:0032259 methylation 6.12% (3/49) 5.56 3.4e-05 0.000255
GO:0022613 ribonucleoprotein complex biogenesis 4.08% (2/49) 6.04 0.000405 0.002751
GO:0042254 ribosome biogenesis 4.08% (2/49) 6.04 0.000405 0.002751
GO:0044085 cellular component biogenesis 4.08% (2/49) 5.92 0.000485 0.003138
GO:0003723 RNA binding 8.16% (4/49) 3.3 0.000718 0.004436
GO:0008152 metabolic process 28.57% (14/49) 1.32 0.00089 0.005264
GO:0009982 pseudouridine synthase activity 4.08% (2/49) 5.41 0.00099 0.005609
GO:0097159 organic cyclic compound binding 24.49% (12/49) 1.39 0.001497 0.007829
GO:1901363 heterocyclic compound binding 24.49% (12/49) 1.39 0.001497 0.007829
GO:0016866 intramolecular transferase activity 4.08% (2/49) 5.04 0.001666 0.008094
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.08% (2/49) 5.04 0.001666 0.008094
GO:0034062 5'-3' RNA polymerase activity 4.08% (2/49) 4.98 0.001822 0.008259
GO:0097747 RNA polymerase activity 4.08% (2/49) 4.98 0.001822 0.008259
GO:0005488 binding 32.65% (16/49) 1.08 0.002132 0.009352
GO:0019213 deacetylase activity 2.04% (1/49) 8.5 0.002762 0.009885
GO:0046493 lipid A metabolic process 2.04% (1/49) 8.5 0.002762 0.009885
GO:1901271 lipooligosaccharide biosynthetic process 2.04% (1/49) 8.5 0.002762 0.009885
GO:0009245 lipid A biosynthetic process 2.04% (1/49) 8.5 0.002762 0.009885
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 2.04% (1/49) 8.5 0.002762 0.009885
GO:1901269 lipooligosaccharide metabolic process 2.04% (1/49) 8.5 0.002762 0.009885
GO:0003674 molecular_function 46.94% (23/49) 0.78 0.002657 0.011292
GO:0043170 macromolecule metabolic process 20.41% (10/49) 1.43 0.00326 0.011367
GO:0097659 nucleic acid-templated transcription 4.08% (2/49) 4.37 0.004195 0.013916
GO:0006351 transcription, DNA-templated 4.08% (2/49) 4.37 0.004195 0.013916
GO:0044237 cellular metabolic process 22.45% (11/49) 1.26 0.004868 0.015762
GO:0031515 tRNA (m1A) methyltransferase complex 2.04% (1/49) 7.5 0.005516 0.01631
GO:0034708 methyltransferase complex 2.04% (1/49) 7.5 0.005516 0.01631
GO:0030488 tRNA methylation 2.04% (1/49) 7.5 0.005516 0.01631
GO:0043527 tRNA methyltransferase complex 2.04% (1/49) 7.5 0.005516 0.01631
GO:0044238 primary metabolic process 22.45% (11/49) 1.17 0.007658 0.022159
GO:0008150 biological_process 30.61% (15/49) 0.93 0.007931 0.02247
GO:0140640 catalytic activity, acting on a nucleic acid 6.12% (3/49) 2.78 0.009463 0.025741
GO:0032774 RNA biosynthetic process 4.08% (2/49) 3.77 0.009414 0.026129
GO:0032040 small-subunit processome 2.04% (1/49) 6.5 0.011003 0.028777
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 2.04% (1/49) 6.5 0.011003 0.028777
GO:0006807 nitrogen compound metabolic process 20.41% (10/49) 1.17 0.011521 0.029016
GO:0071704 organic substance metabolic process 22.45% (11/49) 1.1 0.011324 0.029058
GO:0016779 nucleotidyltransferase activity 4.08% (2/49) 3.59 0.011945 0.029536
GO:0009312 oligosaccharide biosynthetic process 2.04% (1/49) 6.18 0.013735 0.032772
GO:0001510 RNA methylation 2.04% (1/49) 6.18 0.013735 0.032772
GO:0030684 preribosome 2.04% (1/49) 5.92 0.01646 0.038596
GO:0016853 isomerase activity 4.08% (2/49) 3.27 0.018243 0.042051
GO:0009987 cellular process 24.49% (12/49) 0.93 0.018616 0.042195
GO:0009311 oligosaccharide metabolic process 2.04% (1/49) 5.69 0.019178 0.042756
GO:1903509 liposaccharide metabolic process 2.04% (1/49) 5.5 0.021888 0.044429
GO:0046467 membrane lipid biosynthetic process 2.04% (1/49) 5.5 0.021888 0.044429
GO:0006664 glycolipid metabolic process 2.04% (1/49) 5.5 0.021888 0.044429
GO:0006643 membrane lipid metabolic process 2.04% (1/49) 5.5 0.021888 0.044429
GO:0009247 glycolipid biosynthetic process 2.04% (1/49) 5.5 0.021888 0.044429
GO:0003824 catalytic activity 26.53% (13/49) 0.86 0.020594 0.045173
GO:0016740 transferase activity 14.29% (7/49) 1.27 0.024685 0.04937
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_39 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_160 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_166 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_183 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_22 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_69 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_75 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_77 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.033 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_47 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_58 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_99 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_174 0.055 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_191 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_110 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_252 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (49) (download table)

InterPro Domains

GO Terms

Family Terms