AT2G47310

Description : flowering time control protein-related / FCA gamma-related

Gene families : OG_01_0001047 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G47310
Cluster	HCCA: Cluster_76

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000098	sulfur amino acid catabolic process	IEP	HCCA
BP	GO:0001709	cell fate determination	IEP	HCCA
BP	GO:0002218	activation of innate immune response	IEP	HCCA
BP	GO:0002253	activation of immune response	IEP	HCCA
BP	GO:0002684	positive regulation of immune system process	IEP	HCCA
BP	GO:0002833	positive regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0004028	3-chloroallyl aldehyde dehydrogenase activity	IEP	HCCA
MF	GO:0004143	diacylglycerol kinase activity	IEP	HCCA
MF	GO:0004335	galactokinase activity	IEP	HCCA
MF	GO:0004664	prephenate dehydratase activity	IEP	HCCA
MF	GO:0004708	MAP kinase kinase activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006063	uronic acid metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006282	regulation of DNA repair	IEP	HCCA
BP	GO:0006513	protein monoubiquitination	IEP	HCCA
BP	GO:0006558	L-phenylalanine metabolic process	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006671	phytosphingosine metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006812	cation transport	IEP	HCCA
BP	GO:0006882	cellular zinc ion homeostasis	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007006	mitochondrial membrane organization	IEP	HCCA
BP	GO:0007007	inner mitochondrial membrane organization	IEP	HCCA
BP	GO:0007032	endosome organization	IEP	HCCA
BP	GO:0007041	lysosomal transport	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008333	endosome to lysosome transport	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
MF	GO:0008660	1-aminocyclopropane-1-carboxylate deaminase activity	IEP	HCCA
BP	GO:0009093	cysteine catabolic process	IEP	HCCA
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	HCCA
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009663	plasmodesma organization	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	IEP	HCCA
BP	GO:0009957	epidermal cell fate specification	IEP	HCCA
BP	GO:0009969	xyloglucan biosynthetic process	IEP	HCCA
BP	GO:0010026	trichome differentiation	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010411	xyloglucan metabolic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015386	potassium:proton antiporter activity	IEP	HCCA
BP	GO:0016050	vesicle organization	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
MF	GO:0016615	malate dehydrogenase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	IEP	HCCA
MF	GO:0017050	D-erythro-sphingosine kinase activity	IEP	HCCA
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0019148	D-cysteine desulfhydrase activity	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019447	D-cysteine catabolic process	IEP	HCCA
BP	GO:0019478	D-amino acid catabolic process	IEP	HCCA
BP	GO:0019586	galacturonate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0022821	potassium ion antiporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0030002	cellular anion homeostasis	IEP	HCCA
MF	GO:0030276	clathrin binding	IEP	HCCA
BP	GO:0030643	cellular phosphate ion homeostasis	IEP	HCCA
CC	GO:0030904	retromer complex	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0032103	positive regulation of response to external stimulus	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0032922	circadian regulation of gene expression	IEP	HCCA
MF	GO:0032942	inositol tetrakisphosphate 2-kinase activity	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034330	cell junction organization	IEP	HCCA
MF	GO:0035299	inositol pentakisphosphate 2-kinase activity	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0045039	protein insertion into mitochondrial inner membrane	IEP	HCCA
BP	GO:0045089	positive regulation of innate immune response	IEP	HCCA
BP	GO:0045165	cell fate commitment	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0045216	cell-cell junction organization	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046396	D-galacturonate metabolic process	IEP	HCCA
BP	GO:0046416	D-amino acid metabolic process	IEP	HCCA
BP	GO:0046438	D-cysteine metabolic process	IEP	HCCA
BP	GO:0046835	carbohydrate phosphorylation	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0046976	histone methyltransferase activity (H3-K27 specific)	IEP	HCCA
MF	GO:0047631	ADP-ribose diphosphatase activity	IEP	HCCA
MF	GO:0047769	arogenate dehydratase activity	IEP	HCCA
MF	GO:0047912	galacturonokinase activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0050778	positive regulation of immune response	IEP	HCCA
BP	GO:0051204	protein insertion into mitochondrial membrane	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0051765	inositol tetrakisphosphate kinase activity	IEP	HCCA
BP	GO:0055062	phosphate ion homeostasis	IEP	HCCA
BP	GO:0055081	anion homeostasis	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070734	histone H3-K27 methylation	IEP	HCCA
BP	GO:0072502	cellular trivalent inorganic anion homeostasis	IEP	HCCA
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0080171	lytic vacuole organization	IEP	HCCA
BP	GO:0090151	establishment of protein localization to mitochondrial membrane	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	HCCA
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	HCCA
BP	GO:1990019	protein storage vacuole organization	IEP	HCCA
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001202	WW_dom	406	432
IPR000504	RRM_dom	209	275
IPR000504	RRM_dom	112	177

External Links

PLAZA 3.0 Dicots	AT2G47310

AT2G47310

Expression Profile

Co-expression Networks

Functional Annotation