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  5. AT3G06680

AT3G06680


Description : Ribosomal L29e protein family


Gene families : OG_01_0002480 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002480_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06680
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Cre03.g207050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g23580.1 No alias component RPL29 of LSU proteome component 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_8040V3.1 No alias Ribosomal L29e protein family 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_7570V3.1 No alias Ribosomal L29e protein family 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_34380V3.1 No alias Ribosomal L29e protein family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_02821.1 No alias component eL29 of LSU proteome component 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000302 response to reactive oxygen species IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009408 response to heat IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002673 Ribosomal_L29e 25 64
PLAZA 3.0 Dicots AT3G06680