Coexpression cluster: Cluster_207 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 62.5% (35/56) 5.59 0.0 0.0
GO:0005198 structural molecule activity 62.5% (35/56) 5.25 0.0 0.0
GO:0005840 ribosome 60.71% (34/56) 5.66 0.0 0.0
GO:0043228 non-membrane-bounded organelle 64.29% (36/56) 4.68 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 64.29% (36/56) 4.68 0.0 0.0
GO:0044391 ribosomal subunit 50.0% (28/56) 5.57 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 41.07% (23/56) 6.55 0.0 0.0
GO:0006412 translation 51.79% (29/56) 5.29 0.0 0.0
GO:0043043 peptide biosynthetic process 51.79% (29/56) 5.28 0.0 0.0
GO:0006518 peptide metabolic process 51.79% (29/56) 5.23 0.0 0.0
GO:0043604 amide biosynthetic process 51.79% (29/56) 5.19 0.0 0.0
GO:1990904 ribonucleoprotein complex 50.0% (28/56) 5.32 0.0 0.0
GO:0015934 large ribosomal subunit 41.07% (23/56) 6.15 0.0 0.0
GO:0043603 cellular amide metabolic process 51.79% (29/56) 4.87 0.0 0.0
GO:0042254 ribosome biogenesis 35.71% (20/56) 6.56 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 35.71% (20/56) 6.48 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 58.93% (33/56) 3.67 0.0 0.0
GO:0009059 macromolecule biosynthetic process 58.93% (33/56) 3.48 0.0 0.0
GO:0044085 cellular component biogenesis 35.71% (20/56) 5.07 0.0 0.0
GO:0022626 cytosolic ribosome 32.14% (18/56) 5.53 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 51.79% (29/56) 3.54 0.0 0.0
GO:0032991 protein-containing complex 51.79% (29/56) 3.4 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 51.79% (29/56) 3.34 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 66.07% (37/56) 2.41 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 62.5% (35/56) 2.54 0.0 0.0
GO:0044267 cellular protein metabolic process 51.79% (29/56) 2.92 0.0 0.0
GO:0043170 macromolecule metabolic process 67.86% (38/56) 2.05 0.0 0.0
GO:0001510 RNA methylation 23.21% (13/56) 5.22 0.0 0.0
GO:0019538 protein metabolic process 53.57% (30/56) 2.51 0.0 0.0
GO:0044249 cellular biosynthetic process 58.93% (33/56) 2.22 0.0 0.0
GO:1901576 organic substance biosynthetic process 58.93% (33/56) 2.06 0.0 0.0
GO:0009058 biosynthetic process 58.93% (33/56) 2.02 0.0 0.0
GO:0006807 nitrogen compound metabolic process 64.29% (36/56) 1.8 0.0 0.0
GO:0009451 RNA modification 23.21% (13/56) 4.3 0.0 0.0
GO:0005737 cytoplasm 53.57% (30/56) 2.13 0.0 0.0
GO:0044237 cellular metabolic process 69.64% (39/56) 1.46 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 53.57% (30/56) 1.9 0.0 0.0
GO:0044238 primary metabolic process 66.07% (37/56) 1.53 0.0 0.0
GO:0071704 organic substance metabolic process 69.64% (39/56) 1.4 0.0 0.0
GO:0043414 macromolecule methylation 23.21% (13/56) 3.67 0.0 0.0
GO:0032259 methylation 23.21% (13/56) 3.67 0.0 0.0
GO:0008152 metabolic process 71.43% (40/56) 1.32 0.0 0.0
GO:0071840 cellular component organization or biogenesis 42.86% (24/56) 2.18 0.0 0.0
GO:0009987 cellular process 76.79% (43/56) 1.07 0.0 0.0
GO:0006414 translational elongation 8.93% (5/56) 6.23 0.0 0.0
GO:0016070 RNA metabolic process 26.79% (15/56) 2.42 0.0 0.0
GO:0005730 nucleolus 14.29% (8/56) 3.78 0.0 1e-06
GO:0022627 cytosolic small ribosomal subunit 8.93% (5/56) 4.57 2e-06 1.6e-05
GO:0090304 nucleic acid metabolic process 26.79% (15/56) 2.0 3e-06 1.8e-05
GO:0015935 small ribosomal subunit 8.93% (5/56) 4.23 7e-06 4.9e-05
GO:0043226 organelle 87.5% (49/56) 0.53 1e-05 6.7e-05
GO:0043229 intracellular organelle 87.5% (49/56) 0.53 1e-05 6.8e-05
GO:0006139 nucleobase-containing compound metabolic process 26.79% (15/56) 1.63 6e-05 0.000384
GO:0043412 macromolecule modification 23.21% (13/56) 1.8 6.2e-05 0.000388
GO:0015450 protein-transporting ATPase activity 5.36% (3/56) 5.28 6.3e-05 0.00039
GO:0005758 mitochondrial intermembrane space 3.57% (2/56) 7.14 8.4e-05 0.000501
GO:0031970 organelle envelope lumen 3.57% (2/56) 7.14 8.4e-05 0.000501
GO:0008150 biological_process 94.64% (53/56) 0.34 9.3e-05 0.000544
GO:0008320 protein transmembrane transporter activity 5.36% (3/56) 4.89 0.000144 0.00079
GO:0140318 protein transporter activity 5.36% (3/56) 4.89 0.000144 0.00079
GO:0022884 macromolecule transmembrane transporter activity 5.36% (3/56) 4.89 0.000144 0.00079
GO:0098588 bounding membrane of organelle 12.5% (7/56) 2.61 0.000143 0.000822
GO:0003674 molecular_function 92.86% (52/56) 0.35 0.000159 0.000859
GO:0005829 cytosol 19.64% (11/56) 1.87 0.00017 0.000905
GO:0031090 organelle membrane 16.07% (9/56) 2.08 0.000248 0.001296
GO:0070161 anchoring junction 14.29% (8/56) 2.21 0.000304 0.001497
GO:0030054 cell junction 14.29% (8/56) 2.21 0.000304 0.001497
GO:0005911 cell-cell junction 14.29% (8/56) 2.21 0.000304 0.001497
GO:0009506 plasmodesma 14.29% (8/56) 2.21 0.000299 0.00154
GO:0046483 heterocycle metabolic process 26.79% (15/56) 1.41 0.000332 0.001614
GO:0005774 vacuolar membrane 10.71% (6/56) 2.63 0.000413 0.001977
GO:0005743 mitochondrial inner membrane 5.36% (3/56) 4.19 0.0006 0.002833
GO:0006725 cellular aromatic compound metabolic process 26.79% (15/56) 1.25 0.001001 0.004664
GO:0006626 protein targeting to mitochondrion 5.36% (3/56) 3.85 0.001205 0.005537
GO:0070585 protein localization to mitochondrion 5.36% (3/56) 3.82 0.001274 0.005698
GO:0072655 establishment of protein localization to mitochondrion 5.36% (3/56) 3.82 0.001274 0.005698
GO:0031966 mitochondrial membrane 5.36% (3/56) 3.74 0.001494 0.006598
GO:1901360 organic cyclic compound metabolic process 26.79% (15/56) 1.18 0.001693 0.007381
GO:0001072 transcription antitermination factor activity, RNA binding 1.79% (1/56) 8.95 0.002025 0.008396
GO:0031554 regulation of DNA-templated transcription, termination 1.79% (1/56) 8.95 0.002025 0.008396
GO:0031564 transcription antitermination 1.79% (1/56) 8.95 0.002025 0.008396
GO:0071433 cell wall repair 1.79% (1/56) 8.95 0.002025 0.008396
GO:0019866 organelle inner membrane 5.36% (3/56) 3.52 0.002295 0.0094
GO:0006839 mitochondrial transport 5.36% (3/56) 3.31 0.003448 0.013955
GO:0070013 intracellular organelle lumen 3.57% (2/56) 4.22 0.005194 0.020299
GO:0031974 membrane-enclosed lumen 3.57% (2/56) 4.22 0.005194 0.020299
GO:0043233 organelle lumen 3.57% (2/56) 4.22 0.005194 0.020299
GO:0051087 chaperone binding 1.79% (1/56) 7.36 0.006063 0.023424
GO:0005618 cell wall 8.93% (5/56) 2.09 0.00623 0.0238
GO:0030312 external encapsulating structure 8.93% (5/56) 2.07 0.006641 0.025086
GO:0042626 ATPase-coupled transmembrane transporter activity 5.36% (3/56) 2.96 0.006872 0.025676
GO:0005507 copper ion binding 5.36% (3/56) 2.91 0.00748 0.027643
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.79% (1/56) 6.95 0.008076 0.028902
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.79% (1/56) 6.95 0.008076 0.028902
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.79% (1/56) 6.95 0.008076 0.028902
GO:0031125 rRNA 3'-end processing 1.79% (1/56) 6.63 0.010085 0.035716
GO:0015399 primary active transmembrane transporter activity 5.36% (3/56) 2.65 0.012199 0.042761
GO:0042274 ribosomal small subunit biogenesis 1.79% (1/56) 6.14 0.01409 0.047907
GO:0005742 mitochondrial outer membrane translocase complex 1.79% (1/56) 6.14 0.01409 0.047907
GO:0098799 outer mitochondrial membrane protein complex 1.79% (1/56) 6.14 0.01409 0.047907
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_53 0.155 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_122 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_134 0.049 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_164 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_168 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_183 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_93 0.205 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_8 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_9 0.172 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_105 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_141 0.074 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_154 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_155 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_48 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_58 0.147 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_101 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_115 0.263 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_134 0.033 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_201 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_202 0.123 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_211 0.069 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_246 0.106 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_56 0.033 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_69 0.077 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_98 0.057 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_114 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_135 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (56) (download table)

InterPro Domains

GO Terms

Family Terms