1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G08800

AT3G08800


Description : ARM repeat superfamily protein


Gene families : OG_01_0004351 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004351_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G08800
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
Zci_01783.2 No alias regulatory protein (SIEL) of plasmodesmata intercellular... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_01783.3 No alias regulatory protein (SIEL) of plasmodesmata intercellular... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005768 endosome IDA Interproscan
BP GO:0010496 intercellular transport IMP Interproscan
BP GO:0090057 root radial pattern formation IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
CC GO:0000785 chromatin IEP HCCA
CC GO:0000791 euchromatin IEP HCCA
CC GO:0000795 synaptonemal complex IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006029 proteoglycan metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006493 protein O-linked glycosylation IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
BP GO:0009100 glycoprotein metabolic process IEP HCCA
BP GO:0009903 chloroplast avoidance movement IEP HCCA
BP GO:0009904 chloroplast accumulation movement IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010018 far-red light signaling pathway IEP HCCA
BP GO:0010384 cell wall proteoglycan metabolic process IEP HCCA
BP GO:0010404 cell wall hydroxyproline-rich glycoprotein metabolic process IEP HCCA
BP GO:0010405 arabinogalactan protein metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018258 protein O-linked glycosylation via hydroxyproline IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035250 UDP-galactosyltransferase activity IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042753 positive regulation of circadian rhythm IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071490 cellular response to far red light IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT3G08800