AT3G13490


Description : Lysyl-tRNA synthetase, class II


Gene families : OG_01_0008686 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008686_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13490
Cluster HCCA: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
Mp7g09810.1 No alias lysine-tRNA ligase 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_5720V3.1 No alias Lysyl-tRNA synthetase, class II 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005737 cytoplasm ISS Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006399 tRNA metabolic process RCA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009658 chloroplast organization RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0016226 iron-sulfur cluster assembly RCA Interproscan
BP GO:0048481 plant ovule development IMP Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003852 2-isopropylmalate synthase activity IEP HCCA
MF GO:0003992 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004654 polyribonucleotide nucleotidyltransferase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0004818 glutamate-tRNA ligase activity IEP HCCA
MF GO:0004828 serine-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0005982 starch metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006424 glutamyl-tRNA aminoacylation IEP HCCA
BP GO:0006434 seryl-tRNA aminoacylation IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006809 nitric oxide biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007006 mitochondrial membrane organization IEP HCCA
BP GO:0007007 inner mitochondrial membrane organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008652 cellular amino acid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009098 leucine biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009508 plastid chromosome IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
BP GO:0010024 phytochromobilin biosynthetic process IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
BP GO:0010197 polar nucleus fusion IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
CC GO:0010494 cytoplasmic stress granule IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
BP GO:0010677 negative regulation of cellular carbohydrate metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016119 carotene metabolic process IEP HCCA
BP GO:0016120 carotene biosynthetic process IEP HCCA
BP GO:0016122 xanthophyll metabolic process IEP HCCA
BP GO:0016123 xanthophyll biosynthetic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019216 regulation of lipid metabolic process IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019252 starch biosynthetic process IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019747 regulation of isoprenoid metabolic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031897 Tic complex IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032268 regulation of cellular protein metabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042214 terpene metabolic process IEP HCCA
BP GO:0042407 cristae formation IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
CC GO:0042646 plastid nucleoid IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045827 negative regulation of isoprenoid metabolic process IEP HCCA
BP GO:0045833 negative regulation of lipid metabolic process IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045912 negative regulation of carbohydrate metabolic process IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046209 nitric oxide metabolic process IEP HCCA
BP GO:0046246 terpene biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0046890 regulation of lipid biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051055 negative regulation of lipid biosynthetic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051202 phytochromobilin metabolic process IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
BP GO:0062014 negative regulation of small molecule metabolic process IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070180 large ribosomal subunit rRNA binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071071 regulation of phospholipid biosynthetic process IEP HCCA
BP GO:0071072 negative regulation of phospholipid biosynthetic process IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0080022 primary root development IEP HCCA
BP GO:0080158 obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901259 chloroplast rRNA processing IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903725 regulation of phospholipid metabolic process IEP HCCA
BP GO:1903726 negative regulation of phospholipid metabolic process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:2001057 reactive nitrogen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 136 214
IPR004364 Aa-tRNA-synt_II 232 598
PLAZA 3.0 Dicots AT3G13490