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AT3G46020


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0000078 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G46020
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cre02.g079400 No alias No description available 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g21200.1 No alias RNA editing factor (ORRM) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_6610V3.1 No alias glycine-rich RNA-binding protein 3 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_00648.1 No alias RNA editing factor (ORRM) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009432 SOS response IEP HCCA
CC GO:0010369 chromocenter IEP HCCA
CC GO:0010370 perinucleolar chromocenter IEP HCCA
BP GO:0010426 DNA methylation on cytosine within a CHH sequence IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
MF GO:0019948 SUMO activating enzyme activity IEP HCCA
BP GO:0022403 cell cycle phase IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0044848 biological phase IEP HCCA
BP GO:0051325 interphase IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
PLAZA 3.0 Dicots AT3G46020