AT3G50960

Description : phosducin-like protein 3 homolog

Gene families : OG_01_0004210 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004210_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G50960
Cluster	HCCA: Cluster_1

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
BP	GO:0000280	nuclear division	IGI	Interproscan
BP	GO:0000280	nuclear division	RCA	Interproscan
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007000	nucleolus organization	IGI	Interproscan
BP	GO:0007000	nucleolus organization	RCA	Interproscan
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015631	tubulin binding	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0016572	histone phosphorylation	RCA	Interproscan
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0030865	cortical cytoskeleton organization	None	Extended
BP	GO:0031122	cytoplasmic microtubule organization	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043622	cortical microtubule organization	IGI	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0048285	organelle fission	None	Extended
MF	GO:0048487	beta-tubulin binding	IPI	Interproscan
BP	GO:0051211	anisotropic cell growth	IGI	Interproscan
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
CC	GO:0000418	RNA polymerase IV complex	IEP	HCCA
CC	GO:0000419	RNA polymerase V complex	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0000719	photoreactive repair	IEP	HCCA
CC	GO:0000815	ESCRT III complex	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
CC	GO:0001673	male germ cell nucleus	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004360	glutamine-fructose-6-phosphate transaminase (isomerizing) activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004610	phosphoacetylglucosamine mutase activity	IEP	HCCA
MF	GO:0004614	phosphoglucomutase activity	IEP	HCCA
MF	GO:0004758	serine C-palmitoyltransferase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005673	transcription factor TFIIE complex	IEP	HCCA
BP	GO:0006040	amino sugar metabolic process	IEP	HCCA
BP	GO:0006041	glucosamine metabolic process	IEP	HCCA
BP	GO:0006042	glucosamine biosynthetic process	IEP	HCCA
BP	GO:0006047	UDP-N-acetylglucosamine metabolic process	IEP	HCCA
BP	GO:0006048	UDP-N-acetylglucosamine biosynthetic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006290	pyrimidine dimer repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006560	proline metabolic process	IEP	HCCA
BP	GO:0006561	proline biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006900	vesicle budding from membrane	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009647	skotomorphogenesis	IEP	HCCA
BP	GO:0009649	entrainment of circadian clock	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	HCCA
MF	GO:0010301	xanthoxin dehydrogenase activity	IEP	HCCA
BP	GO:0010586	miRNA metabolic process	IEP	HCCA
BP	GO:0010587	miRNA catabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0015939	pantothenate metabolic process	IEP	HCCA
BP	GO:0015940	pantothenate biosynthetic process	IEP	HCCA
BP	GO:0016050	vesicle organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016408	C-acyltransferase activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016441	posttranscriptional gene silencing	IEP	HCCA
MF	GO:0016454	C-palmitoyltransferase activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0016602	CCAAT-binding factor complex	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0019255	glucose 1-phosphate metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0031047	gene silencing by RNA	IEP	HCCA
BP	GO:0031050	dsRNA processing	IEP	HCCA
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0034661	ncRNA catabolic process	IEP	HCCA
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	HCCA
CC	GO:0043073	germ cell nucleus	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0046349	amino sugar biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0055047	generative cell mitosis	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
MF	GO:0070548	L-glutamine aminotransferase activity	IEP	HCCA
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0080024	indolebutyric acid metabolic process	IEP	HCCA
BP	GO:0080026	response to indolebutyric acid	IEP	HCCA
MF	GO:0080054	low-affinity nitrate transmembrane transporter activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:0140014	mitotic nuclear division	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	HCCA
BP	GO:1901073	glucosamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013766	Thioredoxin_domain	89	175

External Links

PLAZA 3.0 Dicots	AT3G50960

AT3G50960

Expression Profile

Co-expression Networks

Functional Annotation