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  5. AT3G54430

AT3G54430


Description : SHI-related sequence 6


Gene families : OG_01_0017804 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G54430
Cluster HCCA: Cluster_228


Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000025 maltose catabolic process IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0004133 glycogen debranching enzyme activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP HCCA
CC GO:0005697 telomerase holoenzyme complex IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005983 starch catabolic process IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
MF GO:0008676 3-deoxy-8-phosphooctulonate synthase activity IEP HCCA
BP GO:0009251 glucan catabolic process IEP HCCA
BP GO:0009313 oligosaccharide catabolic process IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP HCCA
BP GO:0010375 stomatal complex patterning IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010396 rhamnogalacturonan II metabolic process IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
CC GO:0015630 microtubule cytoskeleton IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0019294 keto-3-deoxy-D-manno-octulosonic acid biosynthetic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
CC GO:0031312 extrinsic component of organelle membrane IEP HCCA
CC GO:0031314 extrinsic component of mitochondrial inner membrane IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032206 positive regulation of telomere maintenance IEP HCCA
BP GO:0032210 regulation of telomere maintenance via telomerase IEP HCCA
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
BP GO:0043181 vacuolar sequestering IEP HCCA
BP GO:0043182 vacuolar sequestering of sodium ion IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044247 cellular polysaccharide catabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045489 pectin biosynthetic process IEP HCCA
BP GO:0045926 negative regulation of growth IEP HCCA
BP GO:0046352 disaccharide catabolic process IEP HCCA
BP GO:0046400 keto-3-deoxy-D-manno-octulosonic acid metabolic process IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0052325 cell wall pectin biosynthetic process IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP HCCA
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000278 regulation of DNA biosynthetic process IEP HCCA
BP GO:2000573 positive regulation of DNA biosynthetic process IEP HCCA
BP GO:2000603 regulation of secondary growth IEP HCCA
BP GO:2000604 negative regulation of secondary growth IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT3G54430