AT4G01050


Description : thylakoid rhodanese-like


Gene families : OG_01_0003935 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003935_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G01050
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_10490V3.1 No alias thylakoid rhodanese-like 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_13120V3.1 No alias thylakoid rhodanese-like 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13045.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process RCA Interproscan
BP GO:0000165 MAPK cascade RCA Interproscan
MF GO:0005515 protein binding IPI Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006546 glycine catabolic process RCA Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
BP GO:0006636 unsaturated fatty acid biosynthetic process RCA Interproscan
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process RCA Interproscan
BP GO:0006766 vitamin metabolic process RCA Interproscan
BP GO:0008652 cellular amino acid biosynthetic process RCA Interproscan
BP GO:0009072 aromatic amino acid family metabolic process RCA Interproscan
BP GO:0009106 lipoate metabolic process RCA Interproscan
BP GO:0009108 obsolete coenzyme biosynthetic process RCA Interproscan
BP GO:0009117 nucleotide metabolic process RCA Interproscan
BP GO:0009409 response to cold RCA Interproscan
BP GO:0009416 response to light stimulus RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009534 chloroplast thylakoid IDA Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
BP GO:0009595 detection of biotic stimulus RCA Interproscan
BP GO:0009637 response to blue light RCA Interproscan
BP GO:0009657 plastid organization RCA Interproscan
BP GO:0009695 jasmonic acid biosynthetic process RCA Interproscan
BP GO:0009697 salicylic acid biosynthetic process RCA Interproscan
BP GO:0009744 response to sucrose RCA Interproscan
BP GO:0009749 response to glucose RCA Interproscan
BP GO:0009772 photosynthetic electron transport in photosystem II IMP Interproscan
BP GO:0009773 photosynthetic electron transport in photosystem I RCA Interproscan
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0009902 chloroplast relocation RCA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0010114 response to red light RCA Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
BP GO:0010218 response to far red light RCA Interproscan
BP GO:0010310 regulation of hydrogen peroxide metabolic process RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
BP GO:0015994 chlorophyll metabolic process RCA Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
BP GO:0019216 regulation of lipid metabolic process RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0019344 cysteine biosynthetic process RCA Interproscan
BP GO:0019684 photosynthesis, light reaction RCA Interproscan
BP GO:0019748 secondary metabolic process RCA Interproscan
BP GO:0031348 negative regulation of defense response RCA Interproscan
BP GO:0031408 oxylipin biosynthetic process RCA Interproscan
BP GO:0034660 ncRNA metabolic process RCA Interproscan
BP GO:0035304 regulation of protein dephosphorylation RCA Interproscan
BP GO:0042742 defense response to bacterium IEP Interproscan
BP GO:0042742 defense response to bacterium RCA Interproscan
BP GO:0043900 obsolete regulation of multi-organism process RCA Interproscan
BP GO:0044272 sulfur compound biosynthetic process RCA Interproscan
BP GO:0050832 defense response to fungus RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000312 plastid small ribosomal subunit IEP HCCA
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity IEP HCCA
MF GO:0004364 glutathione transferase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 ion channel activity IEP HCCA
MF GO:0005261 cation channel activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006354 DNA-templated transcription, elongation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
MF GO:0008453 alanine-glyoxylate transaminase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009769 photosynthesis, light harvesting in photosystem II IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP HCCA
BP GO:0015986 ATP synthesis coupled proton transport IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034220 ion transmembrane transport IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042776 mitochondrial ATP synthesis coupled proton transport IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044257 cellular protein catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045259 proton-transporting ATP synthase complex IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0047635 alanine-oxo-acid transaminase activity IEP HCCA
MF GO:0047958 glycine:2-oxoglutarate aminotransferase activity IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0098655 cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT4G01050