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AT4G13210


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000806 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G13210
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27400 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0010089 xylem development RCA Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
BP GO:0044036 cell wall macromolecule metabolic process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004022 alcohol dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0009061 anaerobic respiration IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009638 phototropism IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
MF GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010022 meristem determinacy IEP HCCA
BP GO:0010065 primary meristem tissue development IEP HCCA
BP GO:0010067 procambium histogenesis IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
MF GO:0010279 indole-3-acetic acid amido synthetase activity IEP HCCA
MF GO:0010297 heteropolysaccharide binding IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP HCCA
BP GO:0010432 bract development IEP HCCA
MF GO:0010436 carotenoid dioxygenase activity IEP HCCA
BP GO:0010451 floral meristem growth IEP HCCA
BP GO:0010582 floral meristem determinacy IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
MF GO:0015645 fatty acid ligase activity IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
MF GO:0016208 AMP binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0018455 alcohol dehydrogenase [NAD(P)+] activity IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043649 dicarboxylic acid catabolic process IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP HCCA
BP GO:0048508 embryonic meristem development IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0051749 indole acetic acid carboxyl methyltransferase activity IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071398 cellular response to fatty acid IEP HCCA
BP GO:0071731 response to nitric oxide IEP HCCA
BP GO:0071732 cellular response to nitric oxide IEP HCCA
BP GO:0080086 stamen filament development IEP HCCA
MF GO:0090409 malonyl-CoA synthetase activity IEP HCCA
BP GO:0090410 malonate catabolic process IEP HCCA
BP GO:0090506 axillary shoot meristem initiation IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1902170 cellular response to reactive nitrogen species IEP HCCA
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 139 318
PLAZA 3.0 Dicots AT4G13210