AT4G15560


Description : Deoxyxylulose-5-phosphate synthase


Gene families : OG_01_0002593 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002593_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G15560
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cre07.g356350 No alias Secondary metabolism.terpenoids.methylerythritol... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g09130.1 No alias 1-deoxy-D-xylulose 5-phosphate synthase (DXS) 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13838.1 No alias 1-deoxy-D-xylulose 5-phosphate synthase (DXS) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process RCA Interproscan
BP GO:0006546 glycine catabolic process RCA Interproscan
BP GO:0006636 unsaturated fatty acid biosynthetic process RCA Interproscan
BP GO:0006655 phosphatidylglycerol biosynthetic process RCA Interproscan
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process RCA Interproscan
BP GO:0006766 vitamin metabolic process RCA Interproscan
BP GO:0008652 cellular amino acid biosynthetic process RCA Interproscan
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IDA Interproscan
BP GO:0009072 aromatic amino acid family metabolic process RCA Interproscan
BP GO:0009073 aromatic amino acid family biosynthetic process RCA Interproscan
BP GO:0009106 lipoate metabolic process RCA Interproscan
BP GO:0009108 obsolete coenzyme biosynthetic process RCA Interproscan
BP GO:0009117 nucleotide metabolic process RCA Interproscan
BP GO:0009416 response to light stimulus RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009695 jasmonic acid biosynthetic process RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010155 regulation of proton transport RCA Interproscan
BP GO:0015994 chlorophyll metabolic process RCA Interproscan
BP GO:0015995 chlorophyll biosynthetic process IMP Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
BP GO:0016117 carotenoid biosynthetic process RCA Interproscan
BP GO:0019216 regulation of lipid metabolic process RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway TAS Interproscan
BP GO:0019344 cysteine biosynthetic process RCA Interproscan
BP GO:0019748 secondary metabolic process RCA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0031408 oxylipin biosynthetic process RCA Interproscan
BP GO:0032880 regulation of protein localization RCA Interproscan
BP GO:0044272 sulfur compound biosynthetic process RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0046777 protein autophosphorylation RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006873 cellular ion homeostasis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
MF GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity IEP HCCA
MF GO:0008935 1,4-dihydroxy-2-naphthoyl-CoA synthase activity IEP HCCA
BP GO:0009051 pentose-phosphate shunt, oxidative branch IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0009903 chloroplast avoidance movement IEP HCCA
BP GO:0009904 chloroplast accumulation movement IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
CC GO:0010007 magnesium chelatase complex IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0030003 cellular cation homeostasis IEP HCCA
CC GO:0030076 light-harvesting complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032069 regulation of nuclease activity IEP HCCA
BP GO:0032074 negative regulation of nuclease activity IEP HCCA
BP GO:0032268 regulation of cellular protein metabolic process IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042371 vitamin K biosynthetic process IEP HCCA
BP GO:0042373 vitamin K metabolic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
MF GO:0045550 geranylgeranyl reductase activity IEP HCCA
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP HCCA
BP GO:0046677 response to antibiotic IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050801 ion homeostasis IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051346 negative regulation of hydrolase activity IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:0051775 response to redox state IEP HCCA
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055072 iron ion homeostasis IEP HCCA
BP GO:0055080 cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0060700 regulation of ribonuclease activity IEP HCCA
BP GO:0060701 negative regulation of ribonuclease activity IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071461 cellular response to redox state IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071483 cellular response to blue light IEP HCCA
BP GO:0080005 photosystem stoichiometry adjustment IEP HCCA
MF GO:0080043 quercetin 3-O-glucosyltransferase activity IEP HCCA
MF GO:0080044 quercetin 7-O-glucosyltransferase activity IEP HCCA
MF GO:0080045 quercetin 3'-O-glucosyltransferase activity IEP HCCA
MF GO:0080046 quercetin 4'-O-glucosyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901917 regulation of exoribonuclease activity IEP HCCA
BP GO:1901918 negative regulation of exoribonuclease activity IEP HCCA
BP GO:1905777 regulation of exonuclease activity IEP HCCA
BP GO:1905778 negative regulation of exonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR005477 Dxylulose-5-P_synthase 77 362
IPR005475 Transketolase-like_Pyr-bd 399 560
IPR033248 Transketolase_C 578 701
PLAZA 3.0 Dicots AT4G15560