AT4G17020

Description : transcription factor-related

Gene families : OG_01_0006003 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006003_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G17020
Cluster	HCCA: Cluster_257

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	None	Extended
BP	GO:0006366	transcription by RNA polymerase II	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000009	alpha-1,6-mannosyltransferase activity	IEP	HCCA
MF	GO:0000030	mannosyltransferase activity	IEP	HCCA
BP	GO:0000059	obsolete protein import into nucleus, docking	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000491	small nucleolar ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004526	ribonuclease P activity	IEP	HCCA
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	HCCA
MF	GO:0004576	oligosaccharyl transferase activity	IEP	HCCA
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006611	protein export from nucleus	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007006	mitochondrial membrane organization	IEP	HCCA
BP	GO:0007007	inner mitochondrial membrane organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008373	sialyltransferase activity	IEP	HCCA
MF	GO:0008841	dihydrofolate synthase activity	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
MF	GO:0010427	abscisic acid binding	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016229	steroid dehydrogenase activity	IEP	HCCA
BP	GO:0016233	telomere capping	IEP	HCCA
BP	GO:0016246	RNA interference	IEP	HCCA
BP	GO:0016441	posttranscriptional gene silencing	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0016929	SUMO-specific protease activity	IEP	HCCA
MF	GO:0017005	3'-tyrosyl-DNA phosphodiesterase activity	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	HCCA
MF	GO:0019840	isoprenoid binding	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
BP	GO:0030433	ubiquitin-dependent ERAD pathway	IEP	HCCA
BP	GO:0031048	heterochromatin assembly by small RNA	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0031935	obsolete regulation of chromatin silencing	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	HCCA
BP	GO:0035281	pre-miRNA export from nucleus	IEP	HCCA
BP	GO:0036503	ERAD pathway	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
MF	GO:0042162	telomeric DNA binding	IEP	HCCA
MF	GO:0042562	hormone binding	IEP	HCCA
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	HCCA
MF	GO:0043178	alcohol binding	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0045039	protein insertion into mitochondrial inner membrane	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051204	protein insertion into mitochondrial membrane	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051568	histone H3-K4 methylation	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
MF	GO:0070259	tyrosyl-DNA phosphodiesterase activity	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071472	cellular response to salt stress	IEP	HCCA
BP	GO:0071514	genetic imprinting	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090151	establishment of protein localization to mitochondrial membrane	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004598	TFIIH_p52/Tfb2	15	366

External Links

PLAZA 3.0 Dicots	AT4G17020

AT4G17020

Expression Profile

Co-expression Networks

Functional Annotation