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  5. AT4G17140

AT4G17140


Description : pleckstrin homology (PH) domain-containing protein


Gene families : OG_01_0000837 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000837_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G17140
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Pp3c9_20320V3.1 No alias calcium-dependent lipid-binding family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_11027.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0007155 cell adhesion RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0045010 actin nucleation RCA Interproscan
BP GO:0048765 root hair cell differentiation RCA Interproscan
BP GO:0071555 cell wall organization RCA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
MF GO:0001716 L-amino-acid oxidase activity IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004040 amidase activity IEP HCCA
MF GO:0004630 phospholipase D activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0004829 threonine-tRNA ligase activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006435 threonyl-tRNA aminoacylation IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006986 response to unfolded protein IEP HCCA
BP GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
MF GO:0008734 L-aspartate oxidase activity IEP HCCA
MF GO:0008792 arginine decarboxylase activity IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0009378 four-way junction helicase activity IEP HCCA
BP GO:0009395 phospholipid catabolic process IEP HCCA
BP GO:0009435 NAD biosynthetic process IEP HCCA
BP GO:0009445 putrescine metabolic process IEP HCCA
BP GO:0009446 putrescine biosynthetic process IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0009720 detection of hormone stimulus IEP HCCA
BP GO:0009726 detection of endogenous stimulus IEP HCCA
BP GO:0009729 detection of brassinosteroid stimulus IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010398 xylogalacturonan metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015922 aspartate oxidase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
CC GO:0016591 RNA polymerase II, holoenzyme IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
CC GO:0031209 SCAR complex IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0031348 negative regulation of defense response IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
BP GO:0032386 regulation of intracellular transport IEP HCCA
BP GO:0032388 positive regulation of intracellular transport IEP HCCA
MF GO:0032451 demethylase activity IEP HCCA
MF GO:0032452 histone demethylase activity IEP HCCA
MF GO:0032454 histone H3-methyl-lysine-9 demethylase activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0032922 circadian regulation of gene expression IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033157 regulation of intracellular protein transport IEP HCCA
BP GO:0033169 histone H3-K9 demethylation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0042439 ethanolamine-containing compound metabolic process IEP HCCA
BP GO:0042631 cellular response to water deprivation IEP HCCA
MF GO:0042800 histone methyltransferase activity (H3-K4 specific) IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045596 negative regulation of cell differentiation IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046822 regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP HCCA
BP GO:0046825 regulation of protein export from nucleus IEP HCCA
BP GO:0046827 positive regulation of protein export from nucleus IEP HCCA
MF GO:0047412 N-(long-chain-acyl)ethanolamine deacylase activity IEP HCCA
CC GO:0048471 perinuclear region of cytoplasm IEP HCCA
BP GO:0048497 maintenance of floral organ identity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051125 regulation of actin nucleation IEP HCCA
BP GO:0051127 positive regulation of actin nucleation IEP HCCA
BP GO:0051222 positive regulation of protein transport IEP HCCA
BP GO:0051223 regulation of protein transport IEP HCCA
BP GO:0051495 positive regulation of cytoskeleton organization IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070201 regulation of establishment of protein localization IEP HCCA
BP GO:0070291 N-acylethanolamine metabolic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0070887 cellular response to chemical stimulus IEP HCCA
BP GO:0070919 production of siRNA involved in gene silencing by small RNA IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0071229 cellular response to acid chemical IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071462 cellular response to water stimulus IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090316 positive regulation of intracellular protein transport IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0090700 maintenance of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140457 protein demethylase activity IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902347 response to strigolactone IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902905 positive regulation of supramolecular fiber organization IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
BP GO:1903829 positive regulation of protein localization IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1904951 positive regulation of establishment of protein localization IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
InterPro domains Description Start Stop
IPR031642 VPS13_mid_rpt 561 782
IPR026854 VPS13-like_N 2 107
IPR031646 VPS13_N2 133 374
IPR009291 Vps62 1968 2121
IPR009291 Vps62 2192 2339
PLAZA 3.0 Dicots AT4G17140