AT4G25540

Description : homolog of DNA mismatch repair protein MSH3

Gene families : OG_01_0004271 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004271_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25540
Cluster	HCCA: Cluster_152

Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	None	Extended
CC	GO:0000228	nuclear chromosome	IBA	Interproscan
MF	GO:0000404	heteroduplex DNA loop binding	IBA	Interproscan
BP	GO:0000710	meiotic mismatch repair	IBA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IDA	Interproscan
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005694	chromosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	ISS	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	IBA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	IBA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009410	response to xenobiotic stimulus	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030983	mismatched DNA binding	IDA	Interproscan
MF	GO:0032135	DNA insertion or deletion binding	None	Extended
CC	GO:0032300	mismatch repair complex	IBA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043570	maintenance of DNA repeat elements	IBA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
CC	GO:1990391	DNA repair complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000281	mitotic cytokinesis	IEP	HCCA
BP	GO:0000706	meiotic DNA double-strand break processing	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000729	DNA double-strand break processing	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003872	6-phosphofructokinase activity	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0003983	UTP:glucose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
MF	GO:0004835	tubulin-tyrosine ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005815	microtubule organizing center	IEP	HCCA
CC	GO:0005876	spindle microtubule	IEP	HCCA
CC	GO:0005881	cytoplasmic microtubule	IEP	HCCA
CC	GO:0005945	6-phosphofructokinase complex	IEP	HCCA
BP	GO:0006011	UDP-glucose metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-dependent DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006323	DNA packaging	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0006379	mRNA cleavage	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007140	male meiotic nuclear division	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
MF	GO:0008327	methyl-CpG binding	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
MF	GO:0008469	histone-arginine N-methyltransferase activity	IEP	HCCA
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	HCCA
CC	GO:0009574	preprophase band	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009652	thigmotropism	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009954	proximal/distal pattern formation	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
CC	GO:0010005	cortical microtubule, transverse to long axis	IEP	HCCA
BP	GO:0010032	meiotic chromosome condensation	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010069	zygote asymmetric cytokinesis in embryo sac	IEP	HCCA
BP	GO:0010070	zygote asymmetric cell division	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
MF	GO:0010314	phosphatidylinositol-5-phosphate binding	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0010424	DNA methylation on cytosine within a CG sequence	IEP	HCCA
BP	GO:0010425	DNA methylation on cytosine within a CNG sequence	IEP	HCCA
MF	GO:0010428	methyl-CpNpG binding	IEP	HCCA
MF	GO:0010429	methyl-CpNpN binding	IEP	HCCA
CC	GO:0010445	nuclear dicing body	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
MF	GO:0010491	UTP:arabinose-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0010528	regulation of transposition	IEP	HCCA
BP	GO:0010529	negative regulation of transposition	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010589	leaf proximal/distal pattern formation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
MF	GO:0016273	arginine N-methyltransferase activity	IEP	HCCA
MF	GO:0016274	protein-arginine N-methyltransferase activity	IEP	HCCA
MF	GO:0016277	[myelin basic protein]-arginine N-methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016569	obsolete covalent chromatin modification	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0016572	histone phosphorylation	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017103	UTP:galactose-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018195	peptidyl-arginine modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018216	peptidyl-arginine methylation	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019919	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031047	gene silencing by RNA	IEP	HCCA
BP	GO:0031048	heterochromatin assembly by small RNA	IEP	HCCA
BP	GO:0031050	dsRNA processing	IEP	HCCA
BP	GO:0031054	pre-miRNA processing	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031445	regulation of heterochromatin assembly	IEP	HCCA
BP	GO:0031453	positive regulation of heterochromatin assembly	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	HCCA
MF	GO:0033558	protein deacetylase activity	IEP	HCCA
BP	GO:0034086	maintenance of sister chromatid cohesion	IEP	HCCA
BP	GO:0034090	maintenance of meiotic sister chromatid cohesion	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0034599	cellular response to oxidative stress	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0034969	histone arginine methylation	IEP	HCCA
BP	GO:0034970	histone H3-R2 methylation	IEP	HCCA
BP	GO:0034971	histone H3-R17 methylation	IEP	HCCA
BP	GO:0034972	histone H3-R26 methylation	IEP	HCCA
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	IEP	HCCA
MF	GO:0035197	siRNA binding	IEP	HCCA
MF	GO:0035198	miRNA binding	IEP	HCCA
MF	GO:0035241	protein-arginine omega-N monomethyltransferase activity	IEP	HCCA
MF	GO:0035242	protein-arginine omega-N asymmetric methyltransferase activity	IEP	HCCA
BP	GO:0035246	peptidyl-arginine N-methylation	IEP	HCCA
BP	GO:0035247	peptidyl-arginine omega-N-methylation	IEP	HCCA
BP	GO:0035279	mRNA cleavage involved in gene silencing by miRNA	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
CC	GO:0042645	mitochondrial nucleoid	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044267	cellular protein metabolic process	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046398	UDP-glucuronate metabolic process	IEP	HCCA
MF	GO:0047338	UTP:xylose-1-phosphate uridylyltransferase activity	IEP	HCCA
MF	GO:0047350	glucuronate-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048446	petal morphogenesis	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048497	maintenance of floral organ identity	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051131	chaperone-mediated protein complex assembly	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA
BP	GO:0051316	attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation	IEP	HCCA
BP	GO:0051455	monopolar spindle attachment to meiosis I kinetochore	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051568	histone H3-K4 methylation	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0051748	UTP-monosaccharide-1-phosphate uridylyltransferase activity	IEP	HCCA
BP	GO:0051754	meiotic sister chromatid cohesion, centromeric	IEP	HCCA
BP	GO:0052573	UDP-D-galactose metabolic process	IEP	HCCA
CC	GO:0055028	cortical microtubule	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
MF	GO:0061980	regulatory RNA binding	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070407	oxidation-dependent protein catabolic process	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA
BP	GO:0070601	centromeric sister chromatid cohesion	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090308	regulation of DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0090309	positive regulation of DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090700	maintenance of plant organ identity	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
BP	GO:0120261	regulation of heterochromatin organization	IEP	HCCA
BP	GO:0120263	positive regulation of heterochromatin organization	IEP	HCCA
BP	GO:0140013	meiotic nuclear division	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140458	pre-transcriptional gene silencing by RNA	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
BP	GO:1902275	regulation of chromatin organization	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905269	positive regulation of chromatin organization	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:2001252	positive regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007861	DNA_mismatch_repair_MutS_clamp	632	713
IPR007696	DNA_mismatch_repair_MutS_core	425	758
IPR007695	DNA_mismatch_repair_MutS-lik_N	105	216
IPR000432	DNA_mismatch_repair_MutS_C	813	1009
IPR007860	DNA_mmatch_repair_MutS_con_dom	258	324

External Links

PLAZA 3.0 Dicots	AT4G25540

AT4G25540

Expression Profile

Co-expression Networks

Functional Annotation