AT4G25630


Description : fibrillarin 2


Gene families : OG_01_0001110 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001110_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G25630
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cre02.g077300 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12410V3.1 No alias fibrillarin 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_1450V3.1 No alias fibrillarin 2 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c27_4160V3.1 No alias fibrillarin 2 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_11200V3.1 No alias fibrillarin 2 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_12420V3.1 No alias fibrillarin 2 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15350V3.1 No alias fibrillarin 2 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03348.2 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IGI Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003723 RNA binding IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005730 nucleolus IMP Interproscan
BP GO:0006164 purine nucleotide biosynthetic process RCA Interproscan
BP GO:0006364 rRNA processing IGI Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0009165 nucleotide biosynthetic process RCA Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
CC GO:0016592 mediator complex IDA Interproscan
MF GO:0030515 snoRNA binding ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004152 dihydroorotate dehydrogenase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
MF GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 ion channel activity IEP HCCA
MF GO:0005244 voltage-gated ion channel activity IEP HCCA
MF GO:0005253 anion channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005763 mitochondrial small ribosomal subunit IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006354 DNA-templated transcription, elongation IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006954 inflammatory response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008308 voltage-gated anion channel activity IEP HCCA
MF GO:0008469 histone-arginine N-methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009735 response to cytokinin IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009955 adaxial/abaxial pattern specification IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010588 cotyledon vascular tissue pattern formation IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016273 arginine N-methyltransferase activity IEP HCCA
MF GO:0016274 protein-arginine N-methyltransferase activity IEP HCCA
MF GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0016882 cyclo-ligase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0017126 nucleologenesis IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018195 peptidyl-arginine modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018216 peptidyl-arginine methylation IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0034969 histone arginine methylation IEP HCCA
MF GO:0035241 protein-arginine omega-N monomethyltransferase activity IEP HCCA
MF GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity IEP HCCA
BP GO:0035246 peptidyl-arginine N-methylation IEP HCCA
BP GO:0035247 peptidyl-arginine omega-N-methylation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 mature ribosome assembly IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043628 ncRNA 3'-end processing IEP HCCA
BP GO:0043985 histone H4-R3 methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060688 regulation of morphogenesis of a branching structure IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0080056 petal vascular tissue pattern formation IEP HCCA
BP GO:0080057 sepal vascular tissue pattern formation IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0090506 axillary shoot meristem initiation IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901701 cellular response to oxygen-containing compound IEP HCCA
BP GO:1905428 regulation of plant organ formation IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000032 regulation of secondary shoot formation IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR000692 Fibrillarin 82 309
PLAZA 3.0 Dicots AT4G25630