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  5. AT4G31985

AT4G31985


Description : Ribosomal protein L39 family protein


Gene families : OG_01_0004894 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G31985
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Mp1g26960.1 No alias component RPL39 of LSU proteome component 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_14860V3.1 No alias Ribosomal protein L39 family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_18780V3.1 No alias Ribosomal protein L39 family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005753 mitochondrial proton-transporting ATP synthase complex IEP HCCA
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
CC GO:0045257 succinate dehydrogenase complex (ubiquinone) IEP HCCA
CC GO:0045259 proton-transporting ATP synthase complex IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
CC GO:0045281 succinate dehydrogenase complex IEP HCCA
CC GO:0045283 fumarate reductase complex IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
BP GO:2000039 regulation of trichome morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000077 Ribosomal_L39 9 49
PLAZA 3.0 Dicots AT4G31985