AT4G35050

Description : Transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0011782 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G35050
Cluster	HCCA: Cluster_228

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
BP	GO:0000278	mitotic cell cycle	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	RCA	Interproscan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	RCA	Interproscan
BP	GO:0009756	carbohydrate mediated signaling	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009933	meristem structural organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010074	maintenance of meristem identity	RCA	Interproscan
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010182	sugar mediated signaling pathway	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	RCA	Interproscan
BP	GO:0017038	protein import	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019827	stem cell population maintenance	None	Extended
BP	GO:0019915	lipid storage	RCA	Interproscan
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048532	anatomical structure arrangement	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050826	response to freezing	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051235	maintenance of location	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IPI	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004161	dimethylallyltranstransferase activity	IEP	HCCA
MF	GO:0004337	geranyltranstransferase activity	IEP	HCCA
MF	GO:0004844	uracil DNA N-glycosylase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-dependent DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006379	mRNA cleavage	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008172	S-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
CC	GO:0008622	epsilon DNA polymerase complex	IEP	HCCA
MF	GO:0008898	S-adenosylmethionine-homocysteine S-methyltransferase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009957	epidermal cell fate specification	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016441	posttranscriptional gene silencing	IEP	HCCA
BP	GO:0016569	obsolete covalent chromatin modification	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0030894	replisome	IEP	HCCA
BP	GO:0031047	gene silencing by RNA	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032875	regulation of DNA endoreduplication	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0033477	S-methylmethionine metabolic process	IEP	HCCA
BP	GO:0033528	S-methylmethionine cycle	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
CC	GO:0042575	DNA polymerase complex	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
CC	GO:0043601	nuclear replisome	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0045337	farnesyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0045338	farnesyl diphosphate metabolic process	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048825	cotyledon development	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0097506	deaminated base DNA N-glycosylase activity	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	209	247
IPR001680	WD40_repeat	357	392
IPR001680	WD40_repeat	297	334
IPR001680	WD40_repeat	252	290
IPR022052	Histone-bd_RBBP4_N	17	88

External Links

PLAZA 3.0 Dicots	AT4G35050

AT4G35050

Expression Profile

Co-expression Networks

Functional Annotation