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  5. AT1G21190

AT1G21190


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG_01_0004402 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G21190
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Cre16.g662300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g11310.1 No alias component LSm3 of U6-associated LSm accessory... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_12260V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000785 chromatin IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005513 detection of calcium ion IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006333 chromatin assembly or disassembly IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008154 actin polymerization or depolymerization IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
BP GO:0030041 actin filament polymerization IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP HCCA
MF GO:0051192 prosthetic group binding IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0051592 response to calcium ion IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140414 phosphopantetheine-dependent carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 92
PLAZA 3.0 Dicots AT1G21190