AT5G08110

Description : nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases

Gene families : OG_01_0008062 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008062_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G08110
Cluster	HCCA: Cluster_220

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031048	heterochromatin assembly by small RNA	RCA	Interproscan
BP	GO:0031507	heterochromatin assembly	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000706	meiotic DNA double-strand break processing	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000729	DNA double-strand break processing	IEP	HCCA
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005851	eukaryotic translation initiation factor 2B complex	IEP	HCCA
BP	GO:0006029	proteoglycan metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006409	tRNA export from nucleus	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006493	protein O-linked glycosylation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007140	male meiotic nuclear division	IEP	HCCA
BP	GO:0007143	female meiotic nuclear division	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
MF	GO:0008378	galactosyltransferase activity	IEP	HCCA
BP	GO:0009100	glycoprotein metabolic process	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010384	cell wall proteoglycan metabolic process	IEP	HCCA
BP	GO:0010404	cell wall hydroxyproline-rich glycoprotein metabolic process	IEP	HCCA
BP	GO:0010405	arabinogalactan protein metabolic process	IEP	HCCA
BP	GO:0010496	intercellular transport	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
BP	GO:0016233	telomere capping	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
BP	GO:0018258	protein O-linked glycosylation via hydroxyproline	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034086	maintenance of sister chromatid cohesion	IEP	HCCA
BP	GO:0034090	maintenance of meiotic sister chromatid cohesion	IEP	HCCA
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	HCCA
MF	GO:0035250	UDP-galactosyltransferase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
MF	GO:0042162	telomeric DNA binding	IEP	HCCA
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045947	negative regulation of translational initiation	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048598	embryonic morphogenesis	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048826	cotyledon morphogenesis	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0051031	tRNA transport	IEP	HCCA
BP	GO:0051568	histone H3-K4 methylation	IEP	HCCA
BP	GO:0051781	positive regulation of cell division	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0080156	mitochondrial mRNA modification	IEP	HCCA
BP	GO:0090057	root radial pattern formation	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	HCCA
BP	GO:0140013	meiotic nuclear division	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1900864	mitochondrial RNA modification	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018973	DEAD/DEAH-box_helicase	1029	1110
IPR001650	Helicase_C	647	755
IPR011545	DEAD/DEAH_box_helicase_dom	396	567

External Links

PLAZA 3.0 Dicots	AT5G08110

AT5G08110

Expression Profile

Co-expression Networks

Functional Annotation