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  5. AT5G49420

AT5G49420


Description : MADS-box transcription factor family protein


Gene families : OG_01_0001056 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G49420
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT5G49490 No alias AGAMOUS-like 83 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003938 IMP dehydrogenase activity IEP HCCA
MF GO:0005242 inward rectifier potassium channel activity IEP HCCA
MF GO:0005249 voltage-gated potassium channel activity IEP HCCA
MF GO:0005267 potassium channel activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
BP GO:0006177 GMP biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
BP GO:0010216 maintenance of DNA methylation IEP HCCA
MF GO:0015276 ligand-gated ion channel activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022843 voltage-gated cation channel activity IEP HCCA
MF GO:0030551 cyclic nucleotide binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0046037 GMP metabolic process IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0099094 ligand-gated cation channel activity IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 16 56
PLAZA 3.0 Dicots AT5G49420