AT5G63860

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_01_0005824 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005824_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G63860
Cluster	HCCA: Cluster_164

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	IDA	Interproscan
MF	GO:0005085	guanyl-nucleotide exchange factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	IMP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009649	entrainment of circadian clock	IMP	Interproscan
BP	GO:0010224	response to UV-B	IGI	Interproscan
BP	GO:0010224	response to UV-B	IEP	Interproscan
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0042752	regulation of circadian rhythm	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IDA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0003933	GTP cyclohydrolase activity	IEP	HCCA
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	HCCA
MF	GO:0004334	fumarylacetoacetase activity	IEP	HCCA
MF	GO:0004416	hydroxyacylglutathione hydrolase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004557	alpha-galactosidase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006333	chromatin assembly or disassembly	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006570	tyrosine metabolic process	IEP	HCCA
BP	GO:0006572	tyrosine catabolic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006672	ceramide metabolic process	IEP	HCCA
BP	GO:0006677	glycosylceramide metabolic process	IEP	HCCA
BP	GO:0006687	glycosphingolipid metabolic process	IEP	HCCA
BP	GO:0006722	triterpenoid metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
BP	GO:0010501	RNA secondary structure unwinding	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016104	triterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016137	glycoside metabolic process	IEP	HCCA
BP	GO:0016139	glycoside catabolic process	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0016822	hydrolase activity, acting on acid carbon-carbon bonds	IEP	HCCA
MF	GO:0016823	hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	IEP	HCCA
MF	GO:0019203	carbohydrate phosphatase activity	IEP	HCCA
MF	GO:0019238	cyclohydrolase activity	IEP	HCCA
BP	GO:0019336	phenol-containing compound catabolic process	IEP	HCCA
BP	GO:0019377	glycolipid catabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	HCCA
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
BP	GO:0030149	sphingolipid catabolic process	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030527	structural constituent of chromatin	IEP	HCCA
CC	GO:0031371	ubiquitin conjugating enzyme complex	IEP	HCCA
CC	GO:0031372	UBC13-MMS2 complex	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046466	membrane lipid catabolic process	IEP	HCCA
BP	GO:0046477	glycosylceramide catabolic process	IEP	HCCA
BP	GO:0046479	glycosphingolipid catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046514	ceramide catabolic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA
BP	GO:1901658	glycosyl compound catabolic process	IEP	HCCA
BP	GO:1901999	homogentisate metabolic process	IEP	HCCA
BP	GO:1902000	homogentisate catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000408	Reg_chr_condens	36	81
IPR000408	Reg_chr_condens	242	291
IPR000408	Reg_chr_condens	294	343
IPR000408	Reg_chr_condens	348	378
IPR000408	Reg_chr_condens	190	237
IPR000408	Reg_chr_condens	88	135
IPR000408	Reg_chr_condens	138	187

External Links

PLAZA 3.0 Dicots	AT5G63860

AT5G63860

Expression Profile

Co-expression Networks

Functional Annotation